RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJEB11523 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7665974 7665974 PRJEB11523_P_NODE_3647_length_254_cov_12.482927_g3569_i0 PRJEB11523 3647 254 12.482927 31.70663458 Aliterella chasmolithica 2739056 Bacteria Bacteria 335 2.0399999999999993e-87   NTclustered gi|1713066352|gb|MN243145.1| 2599943 g3569 i0 94.86 102.948818897638 214 11 84 0 21 234 2178 1965 Aliterella chasmolithica PJ S15 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 26149 335 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Aliterellaceae Aliterella Aliterella chasmolithica
9910686 9910686 PRJEB11523_P_NODE_2908_length_297_cov_24.241935_g2830_i0 PRJEB11523 2908 297 24.241935 71.99854695 Chroococcidiopsis 54298 Bacteria Bacteria 398 3.0799999999999996e-106   NTclustered gi|2245450207|gb|CP083761.1| 155894 g2830 i0 95.918 170.037037037037 245 10 82 0 50 294 795396 795152 Chroococcidiopsis sp. CCMEE 29 chromosome blastn 50501 398 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. CCMEE 29
14041843 14041843 PRJEB11523_P_NODE_872_length_646_cov_4.055276_g800_i0 PRJEB11523 872 646 4.055276 26.19708296 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 1098 0   NTclustered gi|225696188|gb|FJ805855.1| 259957 g800 i0 97.802 108.595975232198 637 12 98 2 12 646 2012 2648 Uncultured Chroococcidiopsis sp. clone AR2_2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 70153 1098 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;