RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJEB11523 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3533171 3533171 PRJEB11523_P_NODE_8743_length_160_cov_2.063063_g8665_i0 PRJEB11523 8743 160 2.063063 3.3009008 root 1 Root_unresolved Root_unresolved 89.8 1.01e-13   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g8665 i0 84.211 59.36875 95 11 59 1 3 97 2606 2516 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9499 89.8 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
10216552 10216552 PRJEB11523_P_NODE_7309_length_169_cov_2.550000_g7231_i0 PRJEB11523 7309 169 2.55 4.3095 Acanthamoeba sp. 5756 Discosea other_Eukaryota 257 2.79e-64   NTclustered gi|2233344951|gb|ON399100.1| 5756 g7231 i0 96.774 78.3313609467456 155 4 92 1 1 155 342 189 Acanthamoeba sp. isolate C2D2 small subunit ribosomal RNA gene, partial sequence blastn 13238 257 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
16590627 16590627 PRJEB11523_P_NODE_5734_length_194_cov_1.406897_g5656_i0 PRJEB11523 5734 194 1.406897 2.72938018 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 359 8.809999999999999e-95   NTclustered gi|421976353|gb|JQ519493.1| 318532 g5656 i0 100 17.9690721649485 194 0 100 0 1 194 306 499 Hyalosphenia papilio clone JG11.46_f5 elongation factor 2 alpha gene, partial cds blastn 3486 359 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio
17865497 17865497 PRJEB11523_P_NODE_3495_length_262_cov_5.220657_g3417_i0 PRJEB11523 3495 262 5.220657 13.67812134 Vannella septentrionalis 197531 Discosea other_Eukaryota 235 2.21e-57   NTclustered gi|300078499|gb|GU001161.1| 197531 g3417 i0 85.778 47.2480916030534 225 28 85 3 41 262 950 1173 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12379 235 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
21690365 21690365 PRJEB11523_P_NODE_3838_length_246_cov_3.700508_g3760_i0 PRJEB11523 3838 246 3.700508 9.10324968 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 224 4.45e-54   NTclustered gi|300078498|gb|GU001160.1| 5755 g3760 i0 93.96 1.86991869918699 149 7 60 2 1 147 6177 6325 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 460 224 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22659528 22659528 PRJEB11523_P_NODE_6318_length_183_cov_31.708955_g6240_i0 PRJEB11523 6318 183 31.708955 58.02738765 Cochliopodium 313557 Discosea other_Eukaryota 292 8.44e-75   NTclustered gi|399764160|gb|JQ271671.1| 313997 g6240 i0 100 29.9071038251366 158 0 86 0 26 183 38 195 Cochliopodium minus strain 4692S 18S ribosomal RNA gene, partial sequence blastn 5473 292 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;