RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1287776 1287776 PRJEB10320_P_NODE_14542_length_240_cov_13.668293_g14284_i0 PRJEB10320 14542 240 13.668293 32.8039032 Thermodesulfomicrobium sp. WS 3004129 Bacteria Bacteria 422 1.4299999999999998e-113   NTclustered gi|2416254156|dbj|AP027130.1| 3004129 g14284 i0 99.567 448.770833333333 231 1 96 0 1 231 1850 2080 Thermodesulfomicrobium sp. WS DNA, complete genome blastn 107705 422 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Thermodesulfomicrobium Thermodesulfomicrobium sp. WS
8635582 8635582 PRJEB10320_P_NODE_9547_length_319_cov_2.588028_g9289_i0 PRJEB10320 9547 319 2.588028 8.25580932 Desulfomicrobiaceae 213116 Bacteria Bacteria 523 5.269999999999999e-144   NTclustered gi|1108658126|gb|KX018622.1| 52017 g9289 i0 96.226 103.241379310345 318 12 99 0 2 319 322 5 Desulfomicrobium sp. strain 21 16S ribosomal RNA gene, partial sequence blastn 32934 527 0.992409867172676 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium sp.
11491497 11491497 PRJEB10320_P_NODE_15610_length_229_cov_1.623711_g15352_i0 PRJEB10320 15610 229 1.623711 3.71829819 Thermodesulfomicrobium sp. WS 3004129 Bacteria Bacteria 418 1.7499999999999995e-112   NTclustered gi|2416254156|dbj|AP027130.1| 3004129 g15352 i0 99.563 266.161572052402 229 1 100 0 1 229 3057 2829 Thermodesulfomicrobium sp. WS DNA, complete genome blastn 60951 418 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Thermodesulfomicrobium Thermodesulfomicrobium sp. WS

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;