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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJEB10320 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1287770 1287770 PRJEB10320_P_NODE_13022_length_260_cov_1.893333_g12764_i0 PRJEB10320 13022 260 1.893333 4.9226658 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 267 7.77e-67   NTclustered gi|2289|emb|X59936.1| 4766 g12764 i0 87.029 84.4038461538462 239 28 91 3 25 260 1 239 A.bisexualis gene for actin blastn 21945 267 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
8940454 8940454 PRJEB10320_P_NODE_10688_length_297_cov_1.061069_g10430_i0 PRJEB10320 10688 297 1.061069 3.15137493 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 75 5.89e-9   NTclustered gi|675176002|ref|XM_008898638.1| 761204 g10430 i0 85.135 0.461279461279461 74 9 25 2 55 127 2855 2783 Phytophthora parasitica INRA-310 hypothetical protein partial mRNA blastn 137 75 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
11491489 11491489 PRJEB10320_P_NODE_13950_length_248_cov_1.690141_g13692_i0 PRJEB10320 13950 248 1.690141 4.19154968 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 143 1.29e-29   NTclustered gi|2248513156|ref|NC_063798.1| 325452 g13692 i0 79.147 13.7620967741935 211 40 84 3 20 228 31616 31824 Phytophthora kernoviae isolate 00844/4 mitochondrion, complete genome blastn 3413 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
12767068 12767068 PRJEB10320_P_NODE_17471_length_212_cov_1.474576_g17213_i0 PRJEB10320 17471 212 1.474576 3.12610112 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 145 2.99e-30   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g17213 i0 82.927 4.18396226415094 164 25 76 3 9 170 364 202 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 887 145 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
16590389 16590389 PRJEB10320_P_NODE_18134_length_206_cov_2.052632_g17876_i0 PRJEB10320 18134 206 2.052632 4.22842192 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 226 9.999999999999999e-55   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g17876 i0 86.408 90.9417475728155 206 28 100 0 1 206 347 552 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 18734 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
20414175 20414175 PRJEB10320_P_NODE_28097_length_152_cov_1.025641_g27839_i0 PRJEB10320 28097 152 1.025641 1.55897432 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 183 4.22e-42   NTclustered gi|189084149|gb|BT031665.1| 4784 g27839 i0 88.816 55.3355263157895 152 13 99 3 3 152 1145 1294 Phytophthora capsici clone CBOT53-I08 mRNA sequence blastn 8411 183 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
21690165 21690165 PRJEB10320_P_NODE_23098_length_173_cov_2.608696_g22840_i0 PRJEB10320 23098 173 2.608696 4.51304408 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 128 2.35e-25   NTclustered gi|2795024423|ref|XM_067938288.1| 4785 g22840 i0 81.25 1.88439306358382 160 28 92 2 13 171 360 202 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13598), partial mRNA blastn 326 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24239417 24239417 PRJEB10320_P_NODE_1080_length_982_cov_6.515312_g952_i0 PRJEB10320 1080 982 6.515312 63.98036384 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 621 6.0499999999999986e-173   NTclustered gi|166044823|emb|CU351082.1| 100861 g952 i0 81.242 25.561099796334 773 141 79 4 202 972 920 150 Aphanomyces euteiches cDNA blastn 25101 621 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;