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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB10320 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1287790 1287790 PRJEB10320_P_NODE_19062_length_199_cov_1.475610_g18804_i0 PRJEB10320 19062 199 1.47561 2.9364639 Strongyloides ratti 34506 Nematoda Nematoda 139 1.29e-28   NTclustered gi|1376144539|ref|XM_024652732.1| 34506 g18804 i0 83.007 1.14070351758794 153 26 77 0 47 199 73 225 Strongyloides ratti 40S ribosomal protein S14 (SRAE_2000174400), partial mRNA blastn 227 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
1287803 1287803 PRJEB10320_P_NODE_22442_length_177_cov_1.570423_g22184_i0 PRJEB10320 22442 177 1.570423 2.77964871 Oigolaimella attenuata 669116 Nematoda Nematoda 56.5 0.001   NTclustered gi|256709247|gb|GQ422276.1| 669116 g22184 i0 100 0.169491525423729 30 0 17 0 1 30 71 42 Oigolaimella attenuata small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella attenuata
3839772 3839772 PRJEB10320_P_NODE_9284_length_325_cov_1.655172_g9026_i0 PRJEB10320 9284 325 1.655172 5.379309 Fictor stercorarius 1538713 Nematoda Nematoda 156 2.26e-33   NTclustered gi|675118821|gb|KJ877290.1| 1538713 g9026 i0 84.713 17.4184615384615 157 22 48 2 2 157 580 735 Fictor stercorarius strain RS9003 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 5661 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Fictor Fictor stercorarius
11491519 11491519 PRJEB10320_P_NODE_20230_length_191_cov_1.538462_g19972_i0 PRJEB10320 20230 191 1.538462 2.93846242 Caenorhabditis briggsae 6238 Nematoda Nematoda 159 9.409999999999999e-35   NTclustered gi|268534941|ref|XM_002632558.1| 6238 g19972 i0 81.771 1.00523560209424 192 33 100 2 1 191 1150 1340 Caenorhabditis briggsae Protein CBG21508 (CBG21508), partial mRNA blastn 192 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
12767096 12767096 PRJEB10320_P_NODE_26451_length_158_cov_0.975610_g26193_i0 PRJEB10320 26451 158 0.97561 1.5414638 Caenorhabditis briggsae 6238 Nematoda Nematoda 95.3 2.14e-15   NTclustered gi|268559571|ref|XM_002637731.1| 6238 g26193 i0 87.654 0.784810126582278 81 10 51 0 10 90 1522 1602 Caenorhabditis briggsae Protein CBR-DAF-21 (Cbr-daf-21), partial mRNA blastn 124 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
18834239 18834239 PRJEB10320_P_NODE_13955_length_248_cov_1.652582_g13697_i0 PRJEB10320 13955 248 1.652582 4.09840336 Pristionchus 54125 Nematoda Nematoda 202 2.0999999999999998e-47   NTclustered gi|150982243|gb|EF634710.1| 358043 g13697 i0 83.486 45.9032258064516 218 35 88 1 10 227 87 303 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 11384 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
21384601 21384601 PRJEB10320_P_NODE_23137_length_173_cov_1.739130_g22879_i0 PRJEB10320 23137 173 1.73913 3.0086949 Metazoa 33208 Nematoda Nematoda 320 3.61e-83   NTclustered gi|2646098909|gb|PP099678.1| 49354 g22879 i0 100 99.8150289017341 173 0 100 0 1 173 821 649 Plectus sp. isolate Nem.501 small subunit ribosomal RNA gene, partial sequence blastn 17268 320 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;