RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10320 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3839713 3839713 PRJEB10320_P_NODE_22184_length_179_cov_1.111111_g21926_i0 PRJEB10320 22184 179 1.111111 1.98888869 Chondromyces crocatus 52 Bacteria Bacteria 206 1.0999999999999999e-48   NTclustered gi|169977285|emb|AM946600.1| 52 g21926 i0 88.571 101.558659217877 175 13 96 5 7 177 1579 1408 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 18179 206 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
8940463 8940463 PRJEB10320_P_NODE_12268_length_271_cov_1.008475_g12010_i0 PRJEB10320 12268 271 1.008475 2.73296725 Minicystis rosea 888845 Bacteria Bacteria 56.5 0.002   NTclustered gi|1127353251|gb|CP016211.1| 888845 g12010 i0 92.683 0.151291512915129 41 0 14 3 101 138 8942056 8942096 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 41 56.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;