RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJEB10320 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6391695 6391695 PRJEB10320_P_NODE_25726_length_160_cov_2.248000_g25468_i0 PRJEB10320 25726 160 2.248 3.5968 Cochliopodium arabianum 1676989 Discosea other_Eukaryota 291 2.5799999999999998e-74   NTclustered gi|861685103|gb|KP244685.1| 1676989 g25468 i0 99.375 79.14375 160 1 100 0 1 160 660 819 Cochliopodium arabianum voucher YT360_361 18S ribosomal RNA gene, partial sequence blastn 12663 291 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium arabianum
7360160 7360160 PRJEB10320_P_NODE_406_length_1438_cov_13.662153_g317_i0 PRJEB10320 406 1438 13.662153 196.46176014 Acanthamoeba 5754 Discosea other_Eukaryota 270 3.74e-67   NTclustered gi|28194618|gb|AF479562.1| 29195 g317 i0 72.653 23.4297635605007 980 208 66 45 146 1088 1389 433 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 33692 270 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
8940521 8940521 PRJEB10320_P_NODE_25728_length_160_cov_2.240000_g25470_i0 PRJEB10320 25728 160 2.24 3.584 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 291 2.5799999999999998e-74   NTclustered gi|330902855|gb|JF298253.1| 1017091 g25470 i0 99.375 11.3125 160 1 100 0 1 160 13 172 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 1810 291 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
17865320 17865320 PRJEB10320_P_NODE_25035_length_164_cov_1.062016_g24777_i0 PRJEB10320 25035 164 1.062016 1.74170624 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 281 1.6000000000000001e-71   NTclustered gi|659103845|gb|KJ569729.1| 1512276 g24777 i0 97.561 54.9085365853659 164 4 100 0 1 164 399 562 Cochliopodium kieliense isolate 2 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 9005 281 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
21690200 21690200 PRJEB10320_P_NODE_7638_length_368_cov_2.834835_g7382_i0 PRJEB10320 7638 368 2.834835 10.4321928 Cochliopodium arabianum 1676989 Discosea other_Eukaryota 580 3.609999999999999e-161   NTclustered gi|861685103|gb|KP244685.1| 1676989 g7382 i0 95.664 36.7635869565217 369 2 100 6 1 368 497 142 Cochliopodium arabianum voucher YT360_361 18S ribosomal RNA gene, partial sequence blastn 13529 580 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium arabianum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;