RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14041589 14041589 PRJEB10320_P_NODE_14252_length_244_cov_2.081340_g13994_i0 PRJEB10320 14252 244 2.08134 5.0784696 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 263 9.34e-66   NTclustered gi|657012367|gb|KF302531.1| 2850 g13994 i0 86.122 22.3934426229508 245 32 100 2 1 244 383 140 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 5464 263 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
15315734 15315734 PRJEB10320_P_NODE_1553_length_846_cov_5.893958_g1395_i0 PRJEB10320 1553 846 5.893958 49.86288468 Haslea pseudostrearia 197756 SAR_Eukaryotes SAR_Eukaryotes 189 6.2199999999999985e-43   NTclustered gi|2328347954|ref|NC_067578.1| 197756 g1395 i0 75.333 29.5591016548463 450 81 52 24 1 437 27478 27910 Haslea pseudostrearia strain SCCAP K-1594 mitochondrion, complete genome blastn 25007 189 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Haslea Haslea pseudostrearia
20414143 20414143 PRJEB10320_P_NODE_18837_length_201_cov_1.283133_g18579_i0 PRJEB10320 18837 201 1.283133 2.57909733 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|219128261|ref|XM_002184300.1| 556484 g18579 i0 96.875 0.159203980099502 32 1 16 0 36 67 315 346 Phaeodactylum tricornutum CCAP 1055/1 predicted protein partial mRNA blastn 32 54.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;