RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6391687 6391687 PRJEB10320_P_NODE_23126_length_173_cov_1.963768_g22868_i0 PRJEB10320 23126 173 1.963768 3.39731864 Trueperaceae bacterium 2026798 Bacteria Bacteria 196 6.339999999999999e-46   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g22868 i0 87.283 548.739884393064 173 20 99 2 2 173 3599737 3599908 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 94932 196 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
17560349 17560349 PRJEB10320_P_NODE_3994_length_535_cov_3.012000_g3763_i0 PRJEB10320 3994 535 3.012 16.1142 Truepera 332248 Bacteria Bacteria 579 1.9499999999999993e-160   NTclustered gi|470486385|ref|NR_076754.1| 332249 g3763 i0 86.322 73.2934579439252 541 63 100 9 1 535 1305 1840 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 39212 582 0.994845360824742 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
20414151 20414151 PRJEB10320_P_NODE_20457_length_189_cov_3.136364_g20199_i0 PRJEB10320 20457 189 3.136364 5.92772796 Trueperaceae bacterium 2026798 Bacteria Bacteria 217 5.429999999999999e-52   NTclustered gi|2108366028|gb|CP070651.1| 2026798 g20199 i0 87.302 175.962962962963 189 24 100 0 1 189 9366 9554 MAG: Trueperaceae bacterium isolate bin86 chromosome blastn 33257 217 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;