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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJEB10320 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13592 13592 PRJEB10320_P_NODE_9621_length_317_cov_5.939716_g9363_i0 PRJEB10320 9621 317 5.939716 18.82889972 Stichococcus bacillaris 37433 Plants Plants 311 4.44e-80   NTclustered gi|371782093|emb|HE610125.1| 37433 g9363 i0 96.774 12.8422712933754 186 6 59 0 132 317 7182 6997 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 4071 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
982428 982428 PRJEB10320_P_NODE_21561_length_182_cov_4.897959_g21303_i0 PRJEB10320 21561 182 4.897959 8.91428538 Trebouxiophyceae 75966 Plants Plants 267 5.08e-67   NTclustered gi|2088219092|gb|MZ969861.1| 29647 g21303 i0 100 100 144 0 100 0 1 144 302 445 Stichococcus sp. isolate HP-41P small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18200 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
2563371 2563371 PRJEB10320_P_NODE_10643_length_297_cov_6.458015_g10385_i0 PRJEB10320 10643 297 6.458015 19.18030455 uncultured Diplosphaera 1266964 Plants Plants 544 3.7299999999999996e-150   NTclustered gi|2515376756|gb|OR101613.1| 1266964 g10385 i0 99.663 99.8686868686869 297 1 100 0 1 297 875 579 Uncultured Diplosphaera clone mgcl54_AS20 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29661 544 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae   uncultured Diplosphaera
2563389 2563389 PRJEB10320_P_NODE_15483_length_230_cov_2.092308_g15225_i0 PRJEB10320 15483 230 2.092308 4.8123084 Nannochloris normandinae 926285 Plants Plants 425 1.05e-114   NTclustered gi|922575245|gb|JQ921007.1| 926285 g15225 i0 100 124.030434782609 230 0 100 0 1 230 1135 906 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 28527 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
5115921 5115921 PRJEB10320_P_NODE_22525_length_177_cov_1.119718_g22267_i0 PRJEB10320 22525 177 1.119718 1.98190086 Chlamydomonas reinhardtii 3055 Plants Plants 115 1.88e-21   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g22267 i0 87.129 15.2429378531073 101 13 57 0 1 101 244 144 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 2698 115 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7665793 7665793 PRJEB10320_P_NODE_27487_length_154_cov_1.008403_g27229_i0 PRJEB10320 27487 154 1.008403 1.55294062 uncultured Symbiochloris 2562465 Plants Plants 213 5.48e-51   NTclustered gi|2509725906|gb|OR042192.1| 2562465 g27229 i0 91.613 15.1038961038961 155 11 100 2 1 154 1055 1208 Uncultured Symbiochloris clone BW01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2326 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Symbiochloris
8635554 8635554 PRJEB10320_P_NODE_10887_length_293_cov_3.321705_g10629_i0 PRJEB10320 10887 293 3.321705 9.73259565 Chlorophyta 3041 Plants Plants 542 1.32e-149   NTclustered gi|1523765370|gb|MK231279.1| 29647 g10629 i0 100 100.01023890785 293 0 100 0 1 293 591 883 Stichococcus sp. strain KZ-5-1-1 small subunit ribosomal RNA gene, partial sequence blastn 29303 542 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
13735930 13735930 PRJEB10320_P_NODE_22211_length_178_cov_4.090909_g21953_i0 PRJEB10320 22211 178 4.090909 7.28181802 Trebouxiophyceae 75966 Plants Plants 291 2.93e-74   NTclustered gi|1799637080|gb|MN968346.1| 29647 g21953 i0 96.067 100 178 7 100 0 1 178 1577 1400 Stichococcus sp. strain USMFM_Antarctica 2 small subunit ribosomal RNA gene, partial sequence blastn 17800 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
15010295 15010295 PRJEB10320_P_NODE_10072_length_308_cov_4.831502_g9814_i0 PRJEB10320 10072 308 4.831502 14.88102616 Trebouxiophyceae 75966 Plants Plants 342 1.5199999999999999e-89   NTclustered gi|371782093|emb|HE610125.1| 37433 g9814 i0 86.688 95.8051948051948 308 41 100 0 1 308 3513 3206 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 29508 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
15315779 15315779 PRJEB10320_P_NODE_26653_length_157_cov_1.295082_g26395_i0 PRJEB10320 26653 157 1.295082 2.03327874 Chlamydomonas incerta 51695 Plants Plants 171 3.43e-38   NTclustered gi|74272606|gb|DQ122868.1| 51695 g26395 i0 86.452 42.2802547770701 155 21 99 0 1 155 215 61 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 6638 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
16285052 16285052 PRJEB10320_P_NODE_10693_length_296_cov_7.747126_g10435_i0 PRJEB10320 10693 296 7.747126 22.93149296 Chlorophyta 3041 Plants Plants 503 6.309999999999998e-138   NTclustered gi|1799637008|gb|MN968057.1| 29647 g10435 i0 97.306 100.375 297 7 100 1 1 296 12 308 Stichococcus sp. strain USMFM_Antarctica 1 small subunit ribosomal RNA gene, partial sequence blastn 29711 508 0.990157480314961 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
19139056 19139056 PRJEB10320_P_NODE_27016_length_155_cov_2.650000_g26758_i0 PRJEB10320 27016 155 2.65 4.1075 Trochiscia hystrix 132247 Plants Plants 161 2.03e-35   NTclustered gi|9438174|gb|AF277658.1| 132247 g26758 i0 86.184 85.258064516129 152 17 96 4 1 149 1775 1625 Trochiscia hystrix strain UTEX LB 606 28S ribosomal RNA gene, partial sequence blastn 13215 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Trochiscia Trochiscia hystrix
20414127 20414127 PRJEB10320_P_NODE_15017_length_235_cov_2.285000_g14759_i0 PRJEB10320 15017 235 2.285 5.36975 Monoraphidium neglectum 145388 Plants Plants 104 5.73e-18   NTclustered gi|926764667|ref|XM_014035932.1| 145388 g14759 i0 79.355 5.44255319148936 155 26 65 6 1 152 251 402 Monoraphidium neglectum 40S ribosomal protein S27a mRNA blastn 1279 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
21690135 21690135 PRJEB10320_P_NODE_12558_length_266_cov_3.926407_g12300_i0 PRJEB10320 12558 266 3.926407 10.44424262 Chlamydomonas reinhardtii 3055 Plants Plants 311 3.63e-80   NTclustered gi|2082258180|ref|XM_043067316.1| 3055 g12300 i0 87.97 277.447368421053 266 29 100 1 1 266 1621 1883 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467567v5), mRNA blastn 73801 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22965410 22965410 PRJEB10320_P_NODE_23739_length_170_cov_1.474074_g23481_i0 PRJEB10320 23739 170 1.474074 2.5059258 Auxenochlorella protothecoides 3075 Plants Plants 126 8.26e-25   NTclustered gi|760448344|ref|XM_011402939.1| 3075 g23481 i0 85.714 47.9647058823529 119 17 70 0 37 155 119 1 Auxenochlorella protothecoides 60S ribosomal protein L15 partial mRNA blastn 8154 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;