RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB10320" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13492 13492 PRJEB10320_P_NODE_11441_length_284_cov_1.377510_g11183_i0 PRJEB10320 11441 284 1.37751 3.9121284 Patescibacteria group bacterium 2052139 Bacteria Bacteria 396 1.05e-105   NTclustered gi|2621785934|emb|OY782392.1| 2052139 g11183 i0 91.873 119.401408450704 283 23 99 0 2 284 427950 427668 MAG: Patescibacteria group bacterium isolate 573f42cd-6ce4-4b95-a45b-0ed028197a55 genome assembly, chromosome: 1 blastn 33910 396 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
2563416 2563416 PRJEB10320_P_NODE_22943_length_174_cov_1.971223_g22685_i0 PRJEB10320 22943 174 1.971223 3.42992802 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 294 2.1999999999999998e-75   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g22685 i0 97.126 17.9195402298851 174 5 100 0 1 174 890776 890603 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 3118 294 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
21690157 21690157 PRJEB10320_P_NODE_20358_length_190_cov_1.709677_g20100_i0 PRJEB10320 20358 190 1.709677 3.2483863 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 213 7.08e-51   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g20100 i0 86.842 62.8526315789474 190 25 100 0 1 190 890000 890189 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 11942 213 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;