RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 28 ✖

bioproject 1

  • PRJEB10140 · 28 ✖

analysis 1

  • blastn · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12237 12237 PRJEB10140_P_NODE_224881_length_180_cov_1.160305_g207572_i0 PRJEB10140 224881 180 1.160305 2.088549 uncultured archaeon 115547 Archaea Archaea 333 4.87e-87   NTclustered gi|585410022|dbj|AB905858.1| 115547 g207572 i0 100 100 180 0 100 0 1 180 527 706 Uncultured archaeon gene for 16S ribosomal RNA, partial sequence, clone: C-39 blastn 18000 333 1 Archaea               uncultured archaeon
13252 13252 PRJEB10140_P_NODE_58261_length_629_cov_7.518966_g41685_i0 PRJEB10140 58261 629 7.518966 47.29429614 Saccharolobus caldissimus 1702097 Archaea Archaea 54.7 0.017   NTclustered gi|2129441369|dbj|AP025226.1| 1702097 g41685 i0 100 0.0461049284578696 29 0 5 0 175 203 866123 866095 Saccharolobus caldissimus JCM32116 DNA, complete genome blastn 29 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus caldissimus
1286017 1286017 PRJEB10140_P_NODE_154642_length_241_cov_1.276042_g137334_i0 PRJEB10140 154642 241 1.276042 3.07526122 Promethearchaeota archaeon 2053489 Archaea Archaea 54.7 0.006   NTclustered gi|2107931243|gb|CP070805.1| 2053489 g137334 i0 96.97 0.136929460580913 33 0 13 1 190 221 2013948 2013980 MAG: Promethearchaeota archaeon isolate bin132 chromosome blastn 33 54.7 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
2562809 2562809 PRJEB10140_P_NODE_285303_length_163_cov_0.877193_g267994_i0 PRJEB10140 285303 163 0.877193 1.42982459 Methanobrevibacter millerae 230361 Archaea Archaea 134 4.72e-27   NTclustered gi|968564921|gb|CP011266.1| 230361 g267994 i0 81.595 1 163 28 99 2 2 163 757 596 Methanobrevibacter millerae strain SM9, complete genome blastn 163 134 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
5114243 5114243 PRJEB10140_P_NODE_180545_length_212_cov_1.239264_g163236_i0 PRJEB10140 180545 212 1.239264 2.62723968 Promethearchaeum syntrophicum 2594042 Archaea Archaea 52.8 0.019   NTclustered gi|2778339399|gb|CP042905.2| 2594042 g163236 i0 100 0.132075471698113 28 0 13 0 111 138 1452339 1452366 Promethearchaeum syntrophicum strain MK-D1 chromosome, complete genome blastn 28 52.8 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Promethearchaeum Promethearchaeum syntrophicum
5115691 5115691 PRJEB10140_P_NODE_72905_length_503_cov_7.222467_g55742_i0 PRJEB10140 72905 503 7.222467 36.32900901 Acidiplasma sp. 1872114 Archaea Archaea 52.8 0.049   NTclustered gi|2573969472|gb|CP133599.1| 1872114 g55742 i0 100 0.0556660039761431 28 0 6 0 411 438 625798 625825 MAG: Acidiplasma sp. isolate BR_02 chromosome, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Acidiplasma Acidiplasma sp.
6390701 6390701 PRJEB10140_P_NODE_256906_length_167_cov_0.881356_g239597_i0 PRJEB10140 256906 167 0.881356 1.47186452 Methanosphaera sp. BMS 1789762 Archaea Archaea 309 7.53e-80   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g239597 i0 100 1 167 0 100 0 1 167 1717993 1717827 Methanosphaera sp. BMS chromosome, complete genome blastn 167 309 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
6391412 6391412 PRJEB10140_P_NODE_59186_length_619_cov_3.000000_g42539_i0 PRJEB10140 59186 619 3 18.57 uncultured Candidatus Methanogranum sp. 2093355 Archaea Archaea 54.7 0.017   NTclustered gi|2621784480|emb|OY780938.1| 2093355 g42539 i0 100 0.0936995153473344 29 0 5 0 79 107 1261363 1261391 MAG: uncultured Candidatus Methanogranum sp. isolate 9d90576e-3f35-4afd-8682-ecdb60e67c32 genome assembly, chromosome: 1 blastn 58 54.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanogranum uncultured Candidatus Methanogranum sp.
7663899 7663899 PRJEB10140_P_NODE_13867_length_1882_cov_57.663939_g1794_i4 PRJEB10140 13867 1882 57.663939 1085.23533198 Candidatus Micrarchaeum sp. 2282148 Archaea Archaea 56.5 0.015   NTclustered gi|1972912857|gb|CP060530.1| 2282148 g1794 i4 100 0.0159404888416578 30 0 2 0 1474 1503 941402 941431 Candidatus Micrarchaeum sp. strain A_DKE chromosome, complete genome blastn 30 56.5 1 Archaea   Nanobdellati Candidatus Micrarchaeota Candidatus Micrarchaeia Candidatus Micrarchaeales Candidatus Micrarchaeaceae Candidatus Micrarchaeum Candidatus Micrarchaeum sp.
7663901 7663901 PRJEB10140_P_NODE_13907_length_1878_cov_54.203937_g1794_i5 PRJEB10140 13907 1878 54.203937 1017.94993686 Candidatus Micrarchaeum sp. 2282148 Archaea Archaea 56.5 0.015   NTclustered gi|1972912857|gb|CP060530.1| 2282148 g1794 i5 100 0.0159744408945687 30 0 2 0 1470 1499 941402 941431 Candidatus Micrarchaeum sp. strain A_DKE chromosome, complete genome blastn 30 56.5 1 Archaea   Nanobdellati Candidatus Micrarchaeota Candidatus Micrarchaeia Candidatus Micrarchaeales Candidatus Micrarchaeaceae Candidatus Micrarchaeum Candidatus Micrarchaeum sp.
7664871 7664871 PRJEB10140_P_NODE_263387_length_166_cov_0.888889_g246078_i0 PRJEB10140 263387 166 0.888889 1.47555574 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 176 7.91e-40   NTclustered gi|985614202|gb|CP010834.1| 1609968 g246078 i0 85.976 0.987951807228916 164 23 99 0 3 166 524045 523882 Methanobrevibacter sp. YE315, complete genome blastn 164 176 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
7665029 7665029 PRJEB10140_P_NODE_274807_length_164_cov_0.904348_g257498_i0 PRJEB10140 274807 164 0.904348 1.48313072 Methanobrevibacter ruminantium 83816 Archaea Archaea 147 6.109999999999999e-31   NTclustered gi|288541968|gb|CP001719.1| 634498 g257498 i0 83.648 0.969512195121951 159 23 96 3 7 164 2479778 2479622 Methanobrevibacter ruminantium M1, complete genome blastn 159 147 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
8635331 8635331 PRJEB10140_P_NODE_243827_length_169_cov_1.733333_g226518_i0 PRJEB10140 243827 169 1.733333 2.92933277 Candidatus Nitrosomarinus 1993653 Archaea Archaea 54.7 0.004   NTclustered gi|1196088602|gb|CP021324.1| 1898749 g226518 i0 100 0.343195266272189 29 0 17 0 36 64 1351901 1351873 Candidatus Nitrosomarinus catalina strain SPOT01 chromosome, complete genome blastn 58 54.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalinensis
8940359 8940359 PRJEB10140_P_NODE_82928_length_441_cov_7.612245_g65667_i0 PRJEB10140 82928 441 7.612245 33.57000045 Candidatus Methanoperedenaceae archaeon GB37 2691037 Archaea Archaea 56.5 0.003   NTclustered gi|1964039634|emb|LR991653.1| 2691037 g65667 i0 96.97 0.0748299319727891 33 1 7 0 75 107 1721911 1721879 Candidatus Methanoperedenaceae archaeon GB37 isolate gfbio:2ba61e4a-a911-483b-ba5e-e0ad8afd3b38:GoM-Arc1_E37 genome assembly, chromosome: 1 blastn 33 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae   Candidatus Methanoperedenaceae archaeon GB37
10214239 10214239 PRJEB10140_P_NODE_115869_length_315_cov_2.533835_g98563_i0 PRJEB10140 115869 315 2.533835 7.98158025 Picrophilus oshimae 46632 Archaea Archaea 54.7 0.008   NTclustered gi|48429720|gb|AE017261.1| 1122961 g98563 i0 100 0.0920634920634921 29 0 9 0 267 295 836273 836245 Picrophilus torridus DSM 9790, complete genome blastn 29 54.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Picrophilaceae Picrophilus Picrophilus oshimae
11489888 11489888 PRJEB10140_P_NODE_185090_length_208_cov_0.899371_g167781_i0 PRJEB10140 185090 208 0.899371 1.87069168 Thermococcus eurythermalis 1505907 Archaea Archaea 52.8 0.018   NTclustered gi|700302025|gb|CP008887.1| 1505907 g167781 i0 100 0.134615384615385 28 0 13 0 121 148 1432384 1432357 Thermococcus eurythermalis strain A501, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus eurythermalis
11489924 11489924 PRJEB10140_P_NODE_192710_length_201_cov_1.368421_g175401_i0 PRJEB10140 192710 201 1.368421 2.75052621 Acidianus ambivalens 2283 Archaea Archaea 62.1 2.9e-5   NTclustered gi|1780181985|gb|CP045482.1| 2283 g175401 i0 93.182 0.766169154228856 44 0 20 2 81 121 2242076 2242033 Acidianus ambivalens strain LEI 10 chromosome, complete genome blastn 154 62.1 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus ambivalens
13735480 13735480 PRJEB10140_P_NODE_139271_length_264_cov_2.404651_g121964_i0 PRJEB10140 139271 264 2.404651 6.34827864 Methanobrevibacter 2172 Archaea Archaea 488 1.5499999999999999e-133   NTclustered gi|1433398599|gb|MF787990.1| 115547 g121964 i0 100 100 264 0 100 0 1 264 891 1154 Uncultured archaeon clone TM49 16S ribosomal RNA gene, partial sequence blastn 26400 488 1 Archaea               uncultured archaeon
16588581 16588581 PRJEB10140_P_NODE_149974_length_247_cov_2.020202_g132666_i0 PRJEB10140 149974 247 2.020202 4.98989894 Candidatus Nitrosomarinus catalinensis 1898749 Archaea Archaea 52.8 0.022   NTclustered gi|1196088602|gb|CP021324.1| 1898749 g132666 i0 100 0.11336032388664 28 0 11 0 192 219 1213542 1213515 Candidatus Nitrosomarinus catalina strain SPOT01 chromosome, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalinensis
17865118 17865118 PRJEB10140_P_NODE_79335_length_462_cov_4.239709_g62093_i0 PRJEB10140 79335 462 4.239709 19.58745558 Methanocaldococcus jannaschii 2190 Archaea Archaea 52.8 0.045   NTclustered gi|6626255|gb|L77117.1| 243232 g62093 i0 94.286 0.0757575757575758 35 0 8 2 405 439 442886 442918 Methanocaldococcus jannaschii DSM 2661, complete genome blastn 35 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
19136979 19136979 PRJEB10140_P_NODE_114316_length_319_cov_3.100000_g97010_i0 PRJEB10140 114316 319 3.1 9.889 Thermoproteus uzoniensis 184117 Archaea Archaea 52.8 0.03   NTclustered gi|326946401|gb|CP002590.1| 999630 g97010 i0 100 0.0877742946708464 28 0 9 0 4 31 1601335 1601308 Thermoproteus uzoniensis 768-20, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus uzoniensis
19137319 19137319 PRJEB10140_P_NODE_174276_length_218_cov_1.739645_g156967_i0 PRJEB10140 174276 218 1.739645 3.7924261 Methanocorpusculum labreanum 83984 Archaea Archaea 52.8 0.019   NTclustered gi|124362370|gb|CP000559.1| 410358 g156967 i0 100 0.128440366972477 28 0 13 0 159 186 1026969 1026942 Methanocorpusculum labreanum Z, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum labreanum
20413483 20413483 PRJEB10140_P_NODE_277517_length_164_cov_0.904348_g260208_i0 PRJEB10140 277517 164 0.904348 1.48313072 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.014   NTclustered gi|323706731|gb|CP002529.1| 985053 g260208 i0 100 0.170731707317073 28 0 17 0 67 94 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
21688257 21688257 PRJEB10140_P_NODE_140938_length_261_cov_3.363208_g123631_i0 PRJEB10140 140938 261 3.363208 8.77797288 uncultured euryarchaeote 114243 Archaea Archaea 52.8 0.024   NTclustered gi|730903769|gb|KP211855.1| 114243 g123631 i0 100 0.10727969348659 28 0 11 0 229 256 7464 7491 Uncultured euryarchaeote clone MedDCM-JUL2012-C734 genomic sequence blastn 28 52.8 1 Archaea   Methanobacteriati Methanobacteriota         uncultured euryarchaeote
21689490 21689490 PRJEB10140_P_NODE_278358_length_164_cov_0.895652_g261049_i0 PRJEB10140 278358 164 0.895652 1.46886928 Methanobrevibacter olleyae 294671 Archaea Archaea 241 2.72e-59   NTclustered gi|998157363|gb|CP014265.1| 294671 g261049 i0 93.293 1.8780487804878 164 10 100 1 1 164 91798 91636 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 308 241 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
22659265 22659265 PRJEB10140_P_NODE_256198_length_167_cov_0.881356_g238889_i0 PRJEB10140 256198 167 0.881356 1.47186452 Sulfurisphaera 69655 Archaea Archaea 62.1 2.33e-5   NTclustered gi|1780177153|gb|CP045484.1| 69656 g238889 i0 92.857 0.826347305389222 42 3 25 0 112 153 1204563 1204522 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome blastn 138 62.1 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera ohwakuensis
22964468 22964468 PRJEB10140_P_NODE_262099_length_166_cov_0.888889_g244790_i0 PRJEB10140 262099 166 0.888889 1.47555574 Methanobrevibacter olleyae 294671 Archaea Archaea 268 1.27e-67   NTclustered gi|998157363|gb|CP014265.1| 294671 g244790 i0 96.341 50.3614457831325 164 4 98 2 4 166 1756883 1756721 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 8360 268 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
24237967 24237967 PRJEB10140_P_NODE_199560_length_195_cov_2.917808_g182251_i0 PRJEB10140 199560 195 2.917808 5.6897256 Methanobrevibacter olleyae 294671 Archaea Archaea 52.8 0.017   NTclustered gi|998157363|gb|CP014265.1| 294671 g182251 i0 100 0.143589743589744 28 0 14 0 168 195 1011816 1011789 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;