RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 5 ✖

tax_clade 1

bioproject 1

  • PRJEB10140 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4809917 4809917 PRJEB10140_P_NODE_107344_length_340_cov_2.398625_g90042_i0 PRJEB10140 107344 340 2.398625 8.155325 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 220 8.32e-53   NTclustered gi|2795060721|ref|XM_067931445.1| 4785 g90042 i0 84.279 11.8205882352941 229 32 67 3 17 243 1 227 Phytophthora cinnamomi translation elongation factor aEF-2 (IUM83_07176), partial mRNA blastn 4019 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6085307 6085307 PRJEB10140_P_NODE_224365_length_180_cov_1.541985_g207056_i0 PRJEB10140 224365 180 1.541985 2.775573 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|2794910509|ref|XM_067891118.1| 164328 g207056 i0 88.889 0.427777777777778 45 4 24 1 89 132 223 267 Phytophthora ramorum Ribosome biogenesis protein bop1 (KRP23_5986), partial mRNA blastn 77 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8938432 8938432 PRJEB10140_P_NODE_114648_length_318_cov_4.159851_g97342_i0 PRJEB10140 114648 318 4.159851 13.22832618 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.03   NTclustered gi|698789337|ref|XM_009829399.1| 112090 g97342 i0 100 0.0880503144654088 28 0 9 0 252 279 36 63 Aphanomyces astaci hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8940172 8940172 PRJEB10140_P_NODE_5028_length_3090_cov_5.611312_g2792_i0 PRJEB10140 5028 3090 5.611312 173.3895408 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.025   NTclustered gi|2795041210|ref|XM_067930969.1| 4785 g2792 i0 100 0.00970873786407767 30 0 1 0 2621 2650 3201 3172 Phytophthora cinnamomi Regulator of nonsense transcripts 2 (IUM83_06739), partial mRNA blastn 30 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
10215092 10215092 PRJEB10140_P_NODE_242229_length_170_cov_1.669421_g224920_i0 PRJEB10140 242229 170 1.669421 2.8380157 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.5e-5   NTclustered gi|813129223|ref|XM_012342189.1| 695850 g224920 i0 97.143 0.394117647058824 35 1 21 0 12 46 2804 2838 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 67 60.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;