RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10140 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7663738 7663738 PRJEB10140_P_NODE_108507_length_336_cov_3.278746_g91203_i0 PRJEB10140 108507 336 3.278746 11.01658656 Myxococcota bacterium 2818507 Bacteria Bacteria 52.8 0.032   NTclustered gi|2621786039|emb|OY782497.1| 2818507 g91203 i0 100 0.0833333333333333 28 0 8 0 6 33 4253727 4253754 MAG: Myxococcota bacterium isolate 0c961c99-2a7e-4543-b017-306f11f6fc1d genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
15314459 15314459 PRJEB10140_P_NODE_234593_length_174_cov_1.664000_g217284_i0 PRJEB10140 234593 174 1.664 2.89536 Anaeromyxobacter sp. K 447217 Bacteria Bacteria 122 1.1e-23   NTclustered gi|196170270|gb|CP001131.1| 447217 g217284 i0 82.394 1.63218390804598 142 23 81 2 4 144 3728544 3728404 Anaeromyxobacter sp. K, complete genome blastn 284 122 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K
17864275 17864275 PRJEB10140_P_NODE_252835_length_168_cov_0.873950_g235526_i0 PRJEB10140 252835 168 0.87395 1.468236 Pendulispora albinea 2741071 Bacteria Bacteria 167 4.83e-37   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g235526 i0 86.667 70.7619047619048 150 20 89 0 6 155 4766730 4766581 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 11888 167 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
19137370 19137370 PRJEB10140_P_NODE_18036_length_1614_cov_3.390415_g10358_i0 PRJEB10140 18036 1614 3.390415 54.7212981 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 54.7 0.046   NTclustered gi|2108357597|gb|CP070652.1| 2026735 g10358 i0 96.875 0.0198265179677819 32 1 2 0 874 905 2495666 2495697 MAG: Deltaproteobacteria bacterium isolate bin85 chromosome blastn 32 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
24239162 24239162 PRJEB10140_P_NODE_57100_length_642_cov_7.861720_g6124_i5 PRJEB10140 57100 642 7.86172 50.4722424 Labilithrix luteola 1391654 Bacteria Bacteria 987 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g6124 i5 95.056 121.484423676012 627 31 98 0 16 642 7090465 7089839 Labilithrix luteola strain DSM 27648, complete genome blastn 77993 987 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;