RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10140 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7665405 7665405 PRJEB10140_P_NODE_43967_length_821_cov_2.858808_g29048_i0 PRJEB10140 43967 821 2.858808 23.47081368 Anaerolineae bacterium 2052143 Bacteria Bacteria 62.1 1.37e-4   NTclustered gi|1879344079|gb|CP059258.1| 2052143 g29048 i0 97.297 0.0901339829476248 37 0 5 1 784 820 3932040 3932075 MAG: Anaerolineae bacterium isolate SSC4 chromosome blastn 74 62.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
22659206 22659206 PRJEB10140_P_NODE_229858_length_177_cov_1.421875_g212549_i0 PRJEB10140 229858 177 1.421875 2.51671875 Caldilinea 233191 Bacteria Bacteria 148 1.85e-31   NTclustered gi|470476010|ref|NR_076314.1| 133453 g212549 i0 82.486 99.2203389830509 177 24 98 6 4 177 1320 1148 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 17562 148 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;