RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10140 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1286493 1286493 PRJEB10140_P_NODE_225082_length_180_cov_1.053435_g207773_i0 PRJEB10140 225082 180 1.053435 1.896183 Bdellovibrio sp. NC01 2220073 Bacteria Bacteria 165 1.88e-36   NTclustered gi|1700686220|gb|CP030034.1| 2220073 g207773 i0 85.093 78.0388888888889 161 24 89 0 19 179 1219455 1219615 Bdellovibrio sp. NC01 chromosome, complete genome blastn 14047 165 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
3837613 3837613 PRJEB10140_P_NODE_104924_length_348_cov_2.431438_g87625_i0 PRJEB10140 104924 348 2.431438 8.46140424 Fluviispira sanaruensis 2493639 Bacteria Bacteria 52.8 0.033   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g87625 i0 100 0.0804597701149425 28 0 8 0 268 295 1381414 1381387 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
6390651 6390651 PRJEB10140_P_NODE_253546_length_168_cov_0.865546_g236237_i0 PRJEB10140 253546 168 0.865546 1.45411728 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 183 4.8e-42   NTclustered gi|578016248|gb|CP002190.1| 765869 g236237 i0 86.31 1 168 23 100 0 1 168 2314071 2313904 Bdellovibrio bacteriovorus W, complete genome blastn 168 183 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12765575 12765575 PRJEB10140_P_NODE_195291_length_199_cov_1.306667_g177982_i0 PRJEB10140 195291 199 1.306667 2.60026733 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 54.7 0.005   NTclustered gi|2907625691|emb|OZ223251.1| 2081706 g177982 i0 100 0.14572864321608 29 0 15 0 42 70 2244691 2244663 MAG: Bacteriovoracaceae bacterium isolate 56684ba0-df17-47c9-bcf5-ee076427a4fa genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
16589824 16589824 PRJEB10140_P_NODE_284734_length_163_cov_0.903509_g267425_i0 PRJEB10140 284734 163 0.903509 1.47271967 Bdellovibrio sp. KM01 2748865 Bacteria Bacteria 106 1.03e-18   NTclustered gi|1880307726|gb|CP058348.1| 2748865 g267425 i0 82.258 1.49079754601227 124 20 75 2 32 154 1481166 1481044 Bdellovibrio sp. KM01 chromosome, complete genome blastn 243 106 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. KM01
17864211 17864211 PRJEB10140_P_NODE_248135_length_169_cov_0.866667_g230826_i0 PRJEB10140 248135 169 0.866667 1.46466723 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 163 6.25e-36   NTclustered gi|2800924434|gb|CP168967.1| 959 g230826 i0 85.03 2.82840236686391 167 18 95 5 10 169 430454 430288 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 478 163 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
19136928 19136928 PRJEB10140_P_NODE_104376_length_350_cov_2.136213_g87077_i0 PRJEB10140 104376 350 2.136213 7.4767455 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 52.8 0.033   NTclustered gi|2626289182|emb|OY843585.1| 2053517 g87077 i0 100 0.08 28 0 8 0 240 267 1304458 1304431 MAG: Bdellovibrionales bacterium isolate 022bb5af-5c53-4953-82b0-2ef8059d9f16 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
22963671 22963671 PRJEB10140_P_NODE_165239_length_228_cov_1.156425_g147930_i0 PRJEB10140 165239 228 1.156425 2.636649 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 86.1 2e-12   NTclustered gi|469929247|gb|CP003537.1| 1184267 g147930 i0 87.342 0.346491228070175 79 5 34 4 12 88 647688 647763 Bdellovibrio exovorus JSS, complete genome blastn 79 86.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;