RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 8 ✖

bioproject 1

  • PRJEB10140 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2562809 2562809 PRJEB10140_P_NODE_285303_length_163_cov_0.877193_g267994_i0 PRJEB10140 285303 163 0.877193 1.42982459 Methanobrevibacter millerae 230361 Archaea Archaea 134 4.72e-27   NTclustered gi|968564921|gb|CP011266.1| 230361 g267994 i0 81.595 1 163 28 99 2 2 163 757 596 Methanobrevibacter millerae strain SM9, complete genome blastn 163 134 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
6390701 6390701 PRJEB10140_P_NODE_256906_length_167_cov_0.881356_g239597_i0 PRJEB10140 256906 167 0.881356 1.47186452 Methanosphaera sp. BMS 1789762 Archaea Archaea 309 7.53e-80   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g239597 i0 100 1 167 0 100 0 1 167 1717993 1717827 Methanosphaera sp. BMS chromosome, complete genome blastn 167 309 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
7664871 7664871 PRJEB10140_P_NODE_263387_length_166_cov_0.888889_g246078_i0 PRJEB10140 263387 166 0.888889 1.47555574 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 176 7.91e-40   NTclustered gi|985614202|gb|CP010834.1| 1609968 g246078 i0 85.976 0.987951807228916 164 23 99 0 3 166 524045 523882 Methanobrevibacter sp. YE315, complete genome blastn 164 176 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
7665029 7665029 PRJEB10140_P_NODE_274807_length_164_cov_0.904348_g257498_i0 PRJEB10140 274807 164 0.904348 1.48313072 Methanobrevibacter ruminantium 83816 Archaea Archaea 147 6.109999999999999e-31   NTclustered gi|288541968|gb|CP001719.1| 634498 g257498 i0 83.648 0.969512195121951 159 23 96 3 7 164 2479778 2479622 Methanobrevibacter ruminantium M1, complete genome blastn 159 147 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
17865118 17865118 PRJEB10140_P_NODE_79335_length_462_cov_4.239709_g62093_i0 PRJEB10140 79335 462 4.239709 19.58745558 Methanocaldococcus jannaschii 2190 Archaea Archaea 52.8 0.045   NTclustered gi|6626255|gb|L77117.1| 243232 g62093 i0 94.286 0.0757575757575758 35 0 8 2 405 439 442886 442918 Methanocaldococcus jannaschii DSM 2661, complete genome blastn 35 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
21689490 21689490 PRJEB10140_P_NODE_278358_length_164_cov_0.895652_g261049_i0 PRJEB10140 278358 164 0.895652 1.46886928 Methanobrevibacter olleyae 294671 Archaea Archaea 241 2.72e-59   NTclustered gi|998157363|gb|CP014265.1| 294671 g261049 i0 93.293 1.8780487804878 164 10 100 1 1 164 91798 91636 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 308 241 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
22964468 22964468 PRJEB10140_P_NODE_262099_length_166_cov_0.888889_g244790_i0 PRJEB10140 262099 166 0.888889 1.47555574 Methanobrevibacter olleyae 294671 Archaea Archaea 268 1.27e-67   NTclustered gi|998157363|gb|CP014265.1| 294671 g244790 i0 96.341 50.3614457831325 164 4 98 2 4 166 1756883 1756721 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 8360 268 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
24237967 24237967 PRJEB10140_P_NODE_199560_length_195_cov_2.917808_g182251_i0 PRJEB10140 199560 195 2.917808 5.6897256 Methanobrevibacter olleyae 294671 Archaea Archaea 52.8 0.017   NTclustered gi|998157363|gb|CP014265.1| 294671 g182251 i0 100 0.143589743589744 28 0 14 0 168 195 1011816 1011789 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;