RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB10140" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJEB10140 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1287403 1287403 PRJEB10140_P_NODE_43482_length_829_cov_2.238462_g28648_i0 PRJEB10140 43482 829 2.238462 18.55684998 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 1493 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g28648 i0 99.157 64.3160434258142 830 6 100 1 1 829 2535 3364 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 53318 1493 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
6389789 6389789 PRJEB10140_P_NODE_133386_length_275_cov_2.548673_g116079_i0 PRJEB10140 133386 275 2.548673 7.00885075 Pharyngomonas kirbyi 63601 Heterolobosea other_Eukaryota 52.8 0.025   NTclustered gi|1197711284|ref|NC_034798.1| 63601 g116079 i0 100 0.101818181818182 28 0 10 0 58 85 22890 22917 Pharyngomonas kirbyi isolate AS12B mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea       Pharyngomonas Pharyngomonas kirbyi
10214920 10214920 PRJEB10140_P_NODE_218249_length_184_cov_1.007407_g200940_i0 PRJEB10140 218249 184 1.007407 1.85362888 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 130 7.050000000000001e-26   NTclustered gi|756180514|gb|KP115332.1| 5693 g200940 i0 84.444 30.9184782608696 135 17 72 4 1 133 229 361 Trypanosoma cruzi isolate NegH03 calmodulin (CALM) mRNA, partial cds blastn 5689 130 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
14039494 14039494 PRJEB10140_P_NODE_105312_length_347_cov_1.731544_g88013_i0 PRJEB10140 105312 347 1.731544 6.00845768 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 579 1.2199999999999999e-160   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g88013 i0 96.821 26.4985590778098 346 11 99 0 2 347 2228 1883 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9195 579 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17864914 17864914 PRJEB10140_P_NODE_44275_length_815_cov_76.838120_g29312_i0 PRJEB10140 44275 815 76.83812 626.230678 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 1312 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g29312 i0 96.931 20.1680981595092 782 24 96 0 17 798 3597 4378 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16437 1312 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;