RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJDB9741" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 8 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB9741 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10858 10858 PRJDB9741_P_NODE_17301_length_182_cov_2.879699_g16984_i0 PRJDB9741 17301 182 2.879699 5.24105218 Methanothrix sp. 90426 Archaea Archaea 326 8.260000000000001e-85   NTclustered gi|2621703957|emb|OY762912.1| 90426 g16984 i0 98.901 228.373626373626 182 2 100 0 1 182 202429 202610 MAG: Methanothrix sp. isolate 80880379-7421-4bc7-b5fd-f9f5169ec620 genome assembly, chromosome: 1 blastn 41564 326 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
11051 11051 PRJDB9741_P_NODE_40981_length_160_cov_2.180180_g40664_i0 PRJDB9741 40981 160 2.18018 3.488288 Methanothrix sp. 90426 Archaea Archaea 285 1.2e-72   NTclustered gi|2621703957|emb|OY762912.1| 90426 g40664 i0 98.75 14.01875 160 2 100 0 1 160 202839 202998 MAG: Methanothrix sp. isolate 80880379-7421-4bc7-b5fd-f9f5169ec620 genome assembly, chromosome: 1 blastn 2243 285 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
3532487 3532487 PRJDB9741_P_NODE_31223_length_165_cov_1.517241_g30906_i0 PRJDB9741 31223 165 1.517241 2.50344765 Methanomicrobia 224756 Archaea Archaea 305 9.59e-79   NTclustered gi|66794693|emb|AJ830973.1| 13776 g30906 i0 100 100 165 0 100 0 1 165 346 182 Unidentified archaeon partial 16S rRNA gene, clone 375 blastn 16500 305 1 Archaea               unidentified archaeon
5113326 5113326 PRJDB9741_P_NODE_30745_length_165_cov_2.568966_g30428_i0 PRJDB9741 30745 165 2.568966 4.2387939 Methanothrix sp. 90426 Archaea Archaea 233 4.5899999999999994e-57   NTclustered gi|2626216449|emb|OY821645.1| 90426 g30428 i0 92.121 75.3151515151515 165 13 100 0 1 165 825653 825817 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 12427 233 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
11488888 11488888 PRJDB9741_P_NODE_28310_length_167_cov_0.864407_g27993_i0 PRJDB9741 28310 167 0.864407 1.44355969 Methanosarcina lacustris 170861 Archaea Archaea 198 1.7e-46   NTclustered gi|805377189|gb|CP009515.1| 1434111 g27993 i0 88.485 5.84431137724551 165 17 98 2 2 165 1784925 1785088 Methanosarcina lacustris Z-7289, complete genome blastn 976 198 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina lacustris
12764566 12764566 PRJDB9741_P_NODE_39051_length_161_cov_1.821429_g38734_i0 PRJDB9741 39051 161 1.821429 2.93250069 uncultured Methanoregulaceae archaeon 1392423 Archaea Archaea 63.9 6.18e-6   NTclustered gi|2874253886|emb|OY970061.1| 1392423 g38734 i0 90 0.490683229813665 50 4 31 1 1 50 2364159 2364111 MAG: uncultured Methanoregulaceae archaeon isolate MFD01231.bin.c.5 genome assembly, chromosome: 1 blastn 79 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   uncultured Methanoregulaceae archaeon
16587705 16587705 PRJDB9741_P_NODE_15074_length_186_cov_2.233577_g14757_i0 PRJDB9741 15074 186 2.233577 4.15445322 uncultured archaeon 115547 Archaea Archaea 327 2.36e-85   NTclustered gi|189065855|emb|FM162218.1| 115547 g14757 i0 98.387 99.1505376344086 186 3 100 0 1 186 9 194 Uncultured archaeon partial 16S rRNA gene, isolate ARC7_H02 blastn 18442 327 1 Archaea               uncultured archaeon
18833573 18833573 PRJDB9741_P_NODE_22195_length_174_cov_1.664000_g21878_i0 PRJDB9741 22195 174 1.664 2.89536 Halobacteriales 2235 Archaea Archaea 322 1.01e-83   NTclustered gi|440501381|gb|JX394494.1| 115547 g21878 i0 100 101.011494252874 174 0 100 0 1 174 806 633 Uncultured archaeon clone NYS000286 16S ribosomal RNA gene, partial sequence blastn 17576 322 1 Archaea               uncultured archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;