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contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJDB9741" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 33 ✖

tax_clade 1

bioproject 1

  • PRJDB9741 · 33 ✖

analysis 1

  • blastn · 33 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
981861 981861 PRJDB9741_P_NODE_38841_length_161_cov_2.482143_g38524_i0 PRJDB9741 38841 161 2.482143 3.99625023 root 1 Root_unresolved Root_unresolved 298 1.56e-76   NTclustered gi|166046559|emb|CU367676.1| 100861 g38524 i0 100 5 161 0 100 0 1 161 366 206 Aphanomyces euteiches cDNA blastn 805 298 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
1285229 1285229 PRJDB9741_P_NODE_27682_length_167_cov_0.864407_g27365_i0 PRJDB9741 27682 167 0.864407 1.44355969 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 121 3.789999999999999e-23   NTclustered gi|2795037549|ref|XM_067927198.1| 4785 g27365 i0 84.8 13.1556886227545 125 13 73 6 21 142 293 172 Phytophthora cinnamomi 40S ribosomal protein S20 (IUM83_03212), partial mRNA blastn 2197 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
4809820 4809820 PRJDB9741_P_NODE_42264_length_155_cov_2.528302_g41947_i0 PRJDB9741 42264 155 2.528302 3.9188681 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 145 2.04e-30   NTclustered gi|2795037587|ref|XM_067935188.1| 4785 g41947 i0 86.029 10.3096774193548 136 17 87 2 17 151 1 135 Phytophthora cinnamomi 60S ribosomal protein L5 (IUM83_10672), partial mRNA blastn 1598 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
5113266 5113266 PRJDB9741_P_NODE_2345_length_484_cov_2.528736_g2031_i0 PRJDB9741 2345 484 2.528736 12.23908224 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 311 7.05e-80   NTclustered gi|669159433|ref|XM_008617057.1| 1156394 g2031 i0 83.582 54.6632231404959 335 51 69 4 3 335 474 142 Saprolegnia diclina VS20 50S ribosomal protein L4e mRNA blastn 26457 311 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
6084946 6084946 PRJDB9741_P_NODE_24105_length_171_cov_2.090164_g23788_i0 PRJDB9741 24105 171 2.090164 3.57418044 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 65.8 1.84e-6   NTclustered gi|813119311|ref|XM_012340836.1| 695850 g23788 i0 87.931 0.678362573099415 58 3 33 2 113 168 370 315 Saprolegnia parasitica CBS 223.65 60S ribosomal protein mRNA blastn 116 65.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
6084962 6084962 PRJDB9741_P_NODE_28645_length_166_cov_4.504274_g28328_i0 PRJDB9741 28645 166 4.504274 7.47709484 root 1 Root_unresolved Root_unresolved 305 9.67e-79   NTclustered gi|166046794|emb|CU367369.1| 100861 g28328 i0 100 100 165 0 99 0 2 166 1 165 Aphanomyces euteiches cDNA blastn 16600 307 0.993485342019544 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6084981 6084981 PRJDB9741_P_NODE_35025_length_163_cov_1.789474_g34708_i0 PRJDB9741 35025 163 1.789474 2.91684262 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|166044652|emb|CU367561.1| 100861 g34708 i0 100 89.6932515337423 163 0 100 0 1 163 546 384 Aphanomyces euteiches cDNA blastn 14620 302 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6085001 6085001 PRJDB9741_P_NODE_40405_length_161_cov_0.910714_g40088_i0 PRJDB9741 40405 161 0.910714 1.46624954 root 1 Root_unresolved Root_unresolved 298 1.56e-76   NTclustered gi|166046503|emb|CU367620.1| 100861 g40088 i0 100 28.3913043478261 161 0 100 0 1 161 755 595 Aphanomyces euteiches cDNA blastn 4571 298 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6389156 6389156 PRJDB9741_P_NODE_28126_length_167_cov_0.864407_g27809_i0 PRJDB9741 28126 167 0.864407 1.44355969 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 309 7.53e-80   NTclustered gi|166046566|emb|CU367683.1| 100861 g27809 i0 100 99.4191616766467 167 0 100 0 1 167 67 233 Aphanomyces euteiches cDNA blastn 16603 309 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7359478 7359478 PRJDB9741_P_NODE_22606_length_174_cov_0.968000_g22289_i0 PRJDB9741 22606 174 0.968 1.68432 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 145 2.35e-30   NTclustered gi|59859753|gb|AY729871.1| 92981 g22289 i0 81.714 68.3103448275862 175 30 100 2 1 174 486 313 Apodachlya brachynema elongation factor 1 alpha gene, partial cds blastn 11886 145 1 Eukaryota Sar   Oomycota Saprolegniomycetes Leptomitales Leptomitaceae Apodachlya Apodachlya brachynema
7359480 7359480 PRJDB9741_P_NODE_23006_length_173_cov_1.540323_g22689_i0 PRJDB9741 23006 173 1.540323 2.66475879 root 1 Root_unresolved Root_unresolved 320 3.61e-83   NTclustered gi|166046698|emb|CU367808.1| 100861 g22689 i0 100 13.0115606936416 173 0 100 0 1 173 407 579 Aphanomyces euteiches cDNA blastn 2251 320 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7359503 7359503 PRJDB9741_P_NODE_28006_length_167_cov_0.864407_g27689_i0 PRJDB9741 28006 167 0.864407 1.44355969 root 1 Root_unresolved Root_unresolved 309 7.53e-80   NTclustered gi|166044543|emb|CU367452.1| 100861 g27689 i0 100 100 167 0 100 0 1 167 102 268 Aphanomyces euteiches cDNA blastn 16700 309 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7663402 7663402 PRJDB9741_P_NODE_8627_length_215_cov_1.530120_g8310_i0 PRJDB9741 8627 215 1.53012 3.289758 Phytophthora captiosa 360400 SAR_Eukaryotes SAR_Eukaryotes 132 2.37e-26   NTclustered gi|156987581|gb|EU079660.1| 360400 g8310 i0 83.217 66.5813953488372 143 24 67 0 9 151 498 356 Phytophthora captiosa isolate PD_00107(P10719) translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 14315 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora captiosa
8634976 8634976 PRJDB9741_P_NODE_3867_length_337_cov_1.534722_g3551_i0 PRJDB9741 3867 337 1.534722 5.17201314 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 167 1.09e-36   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g3551 i0 79.583 56.5222551928783 240 43 70 5 44 280 219 455 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 19048 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
9910034 9910034 PRJDB9741_P_NODE_33108_length_164_cov_1.739130_g32791_i0 PRJDB9741 33108 164 1.73913 2.8521732 Achlyaceae 3456998 SAR_Eukaryotes SAR_Eukaryotes 298 1.59e-76   NTclustered gi|6740078|gb|AF218191.1|AF218191 4767 g32791 i0 99.39 99.7378048780488 164 1 100 0 1 164 271 108 Achlya klebsiana large subunit ribosomal RNA gene, partial sequence blastn 16357 298 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
10213684 10213684 PRJDB9741_P_NODE_21789_length_175_cov_1.388889_g21472_i0 PRJDB9741 21789 175 1.388889 2.43055575 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 150 5.079999999999999e-32   NTclustered gi|2795016949|ref|XM_067930458.1| 4785 g21472 i0 86.232 68.3885714285714 138 19 79 0 1 138 897 760 Phytophthora cinnamomi protein transporter Sec61 subunit alpha isoform 2 (IUM83_06269), partial mRNA blastn 11968 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
11185070 11185070 PRJDB9741_P_NODE_11529_length_198_cov_1.026846_g11212_i0 PRJDB9741 11529 198 1.026846 2.03315508 root 1 Root_unresolved Root_unresolved 366 5.4e-97   NTclustered gi|166046674|emb|CU367784.1| 100861 g11212 i0 100 35.1464646464646 198 0 100 0 1 198 281 478 Aphanomyces euteiches cDNA blastn 6959 366 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11488938 11488938 PRJDB9741_P_NODE_34450_length_164_cov_0.886957_g34133_i0 PRJDB9741 34450 164 0.886957 1.45460948 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|166046558|emb|CU367675.1| 100861 g34133 i0 100 99.2317073170732 164 0 100 0 1 164 639 476 Aphanomyces euteiches cDNA blastn 16274 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12460956 12460956 PRJDB9741_P_NODE_16190_length_184_cov_2.259259_g15873_i0 PRJDB9741 16190 184 2.259259 4.15703656 root 1 Root_unresolved Root_unresolved 340 2.99e-89   NTclustered gi|166046571|emb|CU367688.1| 100861 g15873 i0 100 30.9347826086957 184 0 100 0 1 184 347 164 Aphanomyces euteiches cDNA blastn 5692 340 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
15009794 15009794 PRJDB9741_P_NODE_8152_length_220_cov_3.309942_g7835_i0 PRJDB9741 8152 220 3.309942 7.2818724 root 1 Root_unresolved Root_unresolved 206 1.41e-48   NTclustered gi|166044655|emb|CU367564.1| 100861 g7835 i0 100 16.5181818181818 111 0 95 0 1 111 148 258 Aphanomyces euteiches cDNA blastn 3634 206 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16284531 16284531 PRJDB9741_P_NODE_43193_length_152_cov_2.242718_g42876_i0 PRJDB9741 43193 152 2.242718 3.40893136 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 182 1.52e-41   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g42876 i0 90.511 89.7763157894737 137 13 90 0 16 152 1516 1380 A.klebsiana beta-tubulin gene, complete cds blastn 13646 183 0.994535519125683 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
16284550 16284550 PRJDB9741_P_NODE_6813_length_240_cov_2.335079_g6496_i0 PRJDB9741 6813 240 2.335079 5.6041896 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 152 2.0699999999999998e-32   NTclustered gi|66270188|gb|AY961478.1| 4787 g6496 i0 84.768 4.325 151 23 63 0 90 240 154 4 Phytophthora infestans clone MY-09-A-12 ribosomal protein L39 mRNA, complete cds blastn 1038 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
16587753 16587753 PRJDB9741_P_NODE_20494_length_177_cov_1.507812_g20177_i0 PRJDB9741 20494 177 1.507812 2.66882724 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 158 3.0799999999999998e-34   NTclustered gi|2795050211|ref|XM_067941009.1| 4785 g20177 i0 89.516 16.3954802259887 124 13 70 0 18 141 101 224 Phytophthora cinnamomi 40S ribosomal protein S15a (IUM83_16146), partial mRNA blastn 2902 158 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17559778 17559778 PRJDB9741_P_NODE_38374_length_162_cov_0.902655_g38057_i0 PRJDB9741 38374 162 0.902655 1.4623011 root 1 Root_unresolved Root_unresolved 300 4.36e-77   NTclustered gi|166044579|emb|CU367488.1| 100861 g38057 i0 100 99.820987654321 162 0 100 0 1 162 360 199 Aphanomyces euteiches cDNA blastn 16171 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17862910 17862910 PRJDB9741_P_NODE_7935_length_223_cov_2.178161_g7618_i0 PRJDB9741 7935 223 2.178161 4.85729903 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 279 8.34e-71   NTclustered gi|325195820|emb|FR826611.1| 890382 g7618 i0 95.455 22.5829596412556 176 6 78 2 49 223 210 36 Albugo laibachii Nc14, genomic contig CONTIG_3778_NC14_v4_313_8 blastn 5036 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
19136310 19136310 PRJDB9741_P_NODE_12336_length_193_cov_1.062500_g12019_i0 PRJDB9741 12336 193 1.0625 2.050625 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 315 1.9199999999999998e-81   NTclustered gi|166044604|emb|CU367513.1| 100861 g12019 i0 100 51.7046632124352 170 0 88 0 1 170 246 77 Aphanomyces euteiches cDNA blastn 9979 315 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19136501 19136501 PRJDB9741_P_NODE_3616_length_353_cov_2.098684_g3300_i0 PRJDB9741 3616 353 2.098684 7.40835452 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 122 2.51e-23   NTclustered gi|669145241|ref|XM_008609961.1| 1156394 g3300 i0 80.606 19.957507082153 165 26 46 4 175 336 291 452 Saprolegnia diclina VS20 50S ribosomal protein L22e mRNA blastn 7045 122 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
20411608 20411608 PRJDB9741_P_NODE_3437_length_365_cov_2.575949_g3121_i0 PRJDB9741 3437 365 2.575949 9.40221385 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 204 9.04e-48   NTclustered gi|2794929698|ref|XM_067885402.1| 164328 g3121 i0 79.07 55.1671232876712 301 59 82 4 8 306 70 368 Phytophthora ramorum 60S ribosomal protein L18a (KRP23_14565), partial mRNA blastn 20136 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
21383956 21383956 PRJDB9741_P_NODE_20197_length_177_cov_2.656250_g19880_i0 PRJDB9741 20197 177 2.65625 4.7015625 root 1 Root_unresolved Root_unresolved 327 2.2199999999999996e-85   NTclustered gi|166046726|emb|CU367836.1| 100861 g19880 i0 100 59.8305084745763 177 0 100 0 1 177 319 143 Aphanomyces euteiches cDNA blastn 10590 327 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21687626 21687626 PRJDB9741_P_NODE_41758_length_157_cov_2.314815_g41441_i0 PRJDB9741 41758 157 2.314815 3.63425955 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 104 3.53e-18   NTclustered gi|2794905059|ref|XM_067889711.1| 164328 g41441 i0 89.157 42.5414012738853 83 9 53 0 75 157 336 254 Phytophthora ramorum 60S ribosomal protein L34-B (KRP23_4718), partial mRNA blastn 6679 104 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
22962803 22962803 PRJDB9741_P_NODE_25559_length_169_cov_1.975000_g25242_i0 PRJDB9741 25559 169 1.975 3.33775 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 313 5.859999999999999e-81   NTclustered gi|166044664|emb|CU367573.1| 100861 g25242 i0 100 99.5739644970414 169 0 100 0 1 169 252 420 Aphanomyces euteiches cDNA blastn 16828 313 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
23934264 23934264 PRJDB9741_P_NODE_33439_length_164_cov_1.330435_g33122_i0 PRJDB9741 33439 164 1.330435 2.1819134 root 1 Root_unresolved Root_unresolved 303 3.42e-78   NTclustered gi|166044580|emb|CU367489.1| 100861 g33122 i0 100 49.8353658536585 164 0 100 0 1 164 580 417 Aphanomyces euteiches cDNA blastn 8173 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24236709 24236709 PRJDB9741_P_NODE_14920_length_187_cov_1.195652_g14603_i0 PRJDB9741 14920 187 1.195652 2.23586924 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 346 6.56e-91   NTclustered gi|166046594|emb|CU367711.1| 100861 g14603 i0 100 41.8288770053476 187 0 100 0 1 187 242 56 Aphanomyces euteiches cDNA blastn 7822 346 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;