RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB9741" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB9741 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11075 11075 PRJDB9741_P_NODE_5281_length_275_cov_1.535398_g4965_i0 PRJDB9741 5281 275 1.535398 4.2223445 Fimicolochytrium jonesii 1396493 Fungi Fungi 99 3.2e-16   NTclustered gi|2432078701|ref|XM_053072586.1| 1396493 g4965 i0 81.452 0.450909090909091 124 19 44 3 11 132 415 536 Fimicolochytrium jonesii ribosomal protein L6, alpha-beta domain-containing protein (EV422DRAFT_567871), partial mRNA blastn 124 99 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
16587915 16587915 PRJDB9741_P_NODE_4534_length_303_cov_1.909449_g4218_i0 PRJDB9741 4534 303 1.909449 5.78563047 Polychytrium aggregatum 110093 Fungi Fungi 156 2.09e-33   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g4218 i0 94.118 28.8646864686469 102 6 34 0 1 102 292 393 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 8746 156 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
21687639 21687639 PRJDB9741_P_NODE_4398_length_310_cov_1.130268_g4082_i0 PRJDB9741 4398 310 1.130268 3.5038308 Orpinomyces sp. OUS1 301046 Fungi Fungi 231 3.47e-56   NTclustered gi|55859492|emb|AJ864475.1| 301046 g4082 i0 91.176 53.4161290322581 170 15 55 0 1 170 4571 4740 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 16559 231 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;