RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJDB9741" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 25 ✖

bioproject 1

  • PRJDB9741 · 25 ✖

analysis 1

  • blastn · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11096 11096 PRJDB9741_P_NODE_6821_length_240_cov_1.973822_g6504_i0 PRJDB9741 6821 240 1.973822 4.7371728 Auxenochlorella protothecoides 3075 Plants Plants 132 2.7e-26   NTclustered gi|760446116|ref|XM_011401825.1| 3075 g6504 i0 86.066 6.84166666666667 122 17 51 0 117 238 389 268 Auxenochlorella protothecoides 60S ribosomal protein L23 partial mRNA blastn 1642 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
981790 981790 PRJDB9741_P_NODE_2521_length_461_cov_3.429612_g2207_i0 PRJDB9741 2521 461 3.429612 15.81051132 Eukaryota 2759 Plants Plants 54.7 0.012   NTclustered gi|2667916624|gb|OQ848499.1| 173371 g2207 i0 100 0.125813449023861 29 0 6 0 283 311 9568 9596 Cephaleuros virescens chloroplast, complete genome blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros virescens
1285090 1285090 PRJDB9741_P_NODE_10322_length_205_cov_1.397436_g10005_i0 PRJDB9741 10322 205 1.397436 2.8647438 Nannochloris normandinae 926285 Plants Plants 379 7.229999999999999e-101   NTclustered gi|922575245|gb|JQ921007.1| 926285 g10005 i0 100 117.80487804878 205 0 100 0 1 205 299 95 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 24150 379 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
1285114 1285114 PRJDB9741_P_NODE_13362_length_189_cov_3.935714_g13045_i0 PRJDB9741 13362 189 3.935714 7.43849946 Chlorella variabilis 554065 Plants Plants 104 4.41e-18   NTclustered gi|552809028|ref|XM_005842781.1| 554065 g13045 i0 88.372 0.455026455026455 86 10 46 0 9 94 215 130 Chlorella variabilis hypothetical protein (CHLNCDRAFT_37706) mRNA, complete cds blastn 86 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
2257076 2257076 PRJDB9741_P_NODE_26702_length_167_cov_5.805085_g26385_i0 PRJDB9741 26702 167 5.805085 9.69449195 Trebouxiophyceae 75966 Plants Plants 252 1.29e-62   NTclustered gi|746948124|ref|NC_025531.1| 33092 g26385 i0 93.976 132.341317365269 166 10 99 0 1 166 145884 146049 Koliella longiseta culture-collection UTEX:339 chloroplast, complete genome blastn 22101 254 0.992125984251969 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
3837250 3837250 PRJDB9741_P_NODE_6764_length_241_cov_2.197917_g6447_i0 PRJDB9741 6764 241 2.197917 5.29697997 Chlamydomonas incerta 51695 Plants Plants 228 3.3599999999999994e-55   NTclustered gi|74272706|gb|DQ122918.1| 51695 g6447 i0 85.202 23.1161825726141 223 31 92 2 20 241 722 501 Chlamydomonas incerta S-adenosyl-L-methionine synthetase (SAMS) mRNA, partial cds blastn 5571 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
7359412 7359412 PRJDB9741_P_NODE_10486_length_204_cov_0.941935_g10169_i0 PRJDB9741 10486 204 0.941935 1.9215474 Eukaryota 2759 Plants Plants 333 5.679999999999999e-87   NTclustered gi|1914023927|gb|MW075319.1| 50037 g10169 i0 96.078 100.039215686275 204 8 100 0 1 204 641 844 Bracteacoccus minor strain SAG 221-1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20408 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
7663158 7663158 PRJDB9741_P_NODE_16507_length_184_cov_1.370370_g16190_i0 PRJDB9741 16507 184 1.37037 2.5214808 Tetratostichococcus jenerensis 358140 Plants Plants 316 5.04e-82   NTclustered gi|728042182|gb|KM438445.1| 358140 g16190 i0 97.814 111.853260869565 183 4 99 0 2 184 1 183 Stichococcus jenerensis isolate CAUP J 1302 photosystem II protein D1 (psbA) gene, partial cds; chloroplast blastn 20581 316 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Tetratostichococcus Tetratostichococcus jenerensis
7663291 7663291 PRJDB9741_P_NODE_33527_length_164_cov_0.886957_g33210_i0 PRJDB9741 33527 164 0.886957 1.45460948 Ulothrix zonata 43941 Plants Plants 303 3.42e-78   NTclustered gi|530445648|emb|HE860527.1| 43941 g33210 i0 100 3.9390243902439 164 0 100 0 1 164 582 419 Ulothrix zonata partial 28S rRNA gene, isolate N94 blastn 646 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Ulothrix Ulothrix zonata
7663320 7663320 PRJDB9741_P_NODE_3747_length_344_cov_1.555932_g3431_i0 PRJDB9741 3747 344 1.555932 5.35240608 Chlamydomonas reinhardtii 3055 Plants Plants 154 8.67e-33   NTclustered gi|2082261495|ref|XM_001692933.2| 3055 g3431 i0 83.041 33.9563953488372 171 27 49 2 156 325 929 760 Chlamydomonas reinhardtii ribosomal protein L8 (CHLRE_12g535851v5), mRNA blastn 11681 154 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8938006 8938006 PRJDB9741_P_NODE_43328_length_151_cov_2.901961_g43011_i0 PRJDB9741 43328 151 2.901961 4.38196111 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.012   NTclustered gi|2082261804|ref|XM_043069141.1| 3055 g43011 i0 100 0.185430463576159 28 0 19 0 89 116 2759 2786 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g558950v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
11488745 11488745 PRJDB9741_P_NODE_10910_length_200_cov_1.344371_g10593_i0 PRJDB9741 10910 200 1.344371 2.688742 Monoraphidium neglectum 145388 Plants Plants 132 2.17e-26   NTclustered gi|926770371|ref|XM_014038206.1| 145388 g10593 i0 78.607 25.135 201 41 100 2 1 200 70 269 Monoraphidium neglectum solute carrier family 25 partial mRNA blastn 5027 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11488998 11488998 PRJDB9741_P_NODE_4370_length_311_cov_1.526718_g4054_i0 PRJDB9741 4370 311 1.526718 4.74809298 Chlamydomonas reinhardtii 3055 Plants Plants 104 7.91e-18   NTclustered gi|2082268984|ref|XM_001698794.2| 3055 g4054 i0 81.89 1.67202572347267 127 19 40 4 9 133 561 437 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g690431v5), mRNA blastn 520 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12764432 12764432 PRJDB9741_P_NODE_21351_length_176_cov_0.905512_g21034_i0 PRJDB9741 21351 176 0.905512 1.59370112 Monoraphidium neglectum 145388 Plants Plants 161 2.3599999999999997e-35   NTclustered gi|926773841|ref|XM_014039941.1| 145388 g21034 i0 85 68.625 160 22 90 2 1 159 216 58 Monoraphidium neglectum 40S ribosomal protein S23 mRNA blastn 12078 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
12764499 12764499 PRJDB9741_P_NODE_29611_length_166_cov_0.871795_g29294_i0 PRJDB9741 29611 166 0.871795 1.4471797 Auxenochlorella protothecoides 3075 Plants Plants 296 5.82e-76   NTclustered gi|760438676|ref|XM_011398105.1| 3075 g29294 i0 98.795 92.7951807228916 166 2 100 0 1 166 351 516 Auxenochlorella protothecoides 40S ribosomal protein S5-2 partial mRNA blastn 15404 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
14039144 14039144 PRJDB9741_P_NODE_6552_length_245_cov_1.596939_g6235_i0 PRJDB9741 6552 245 1.596939 3.91250055 Chlamydomonas reinhardtii 3055 Plants Plants 250 7.31e-62   NTclustered gi|2082244743|ref|XM_001698671.2| 3055 g6235 i0 87.273 94.534693877551 220 26 89 2 6 224 509 727 Chlamydomonas reinhardtii ribosomal protein L23 (CHLRE_04g211800v5), mRNA blastn 23161 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14039148 14039148 PRJDB9741_P_NODE_6792_length_241_cov_1.182292_g6475_i0 PRJDB9741 6792 241 1.182292 2.84932372 Chlorella variabilis 554065 Plants Plants 243 1.2e-59   NTclustered gi|552844675|ref|XM_005851082.1| 554065 g6475 i0 86.977 91.1327800829876 215 28 89 0 25 239 89 303 Chlorella variabilis alpha-tubulin (CHLNCDRAFT_33793) mRNA, complete cds blastn 21963 243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
15009688 15009688 PRJDB9741_P_NODE_21912_length_175_cov_1.206349_g21595_i0 PRJDB9741 21912 175 1.206349 2.11111075 root 1 Root_unresolved Root_unresolved 63.9 6.81e-6   NTclustered gi|1783497176|ref|NC_045362.1| 3077 g21595 i0 76.515 25.1828571428571 132 21 70 7 42 163 19508 19377 Chlorella vulgaris strain NJ-7 mitochondrion, complete genome blastn 4407 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
15313061 15313061 PRJDB9741_P_NODE_21513_length_175_cov_1.976190_g21196_i0 PRJDB9741 21513 175 1.97619 3.4583325 Chlamydomonas incerta 51695 Plants Plants 137 3.96e-28   NTclustered gi|74272606|gb|DQ122868.1| 51695 g21196 i0 84.286 23.9485714285714 140 22 80 0 36 175 597 458 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 4191 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
15313070 15313070 PRJDB9741_P_NODE_22813_length_173_cov_1.862903_g22496_i0 PRJDB9741 22813 173 1.862903 3.22282219 Jaagichlorella sp. FACHB-2416 2704670 Plants Plants 198 1.7599999999999998e-46   NTclustered gi|1802907784|gb|MT006205.1| 2704670 g22496 i0 87.283 16.635838150289 173 22 100 0 1 173 4054 3882 Jaagichlorella sp. FACHB-2416 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2878 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella sp. FACHB-2416
16587901 16587901 PRJDB9741_P_NODE_4114_length_323_cov_3.864964_g3798_i0 PRJDB9741 4114 323 3.864964 12.48383372 Pseudochlorella signiensis 173497 Plants Plants 416 9.339999999999998e-112   NTclustered gi|725650714|ref|NC_025529.1| 173497 g3798 i0 92.491 110.235294117647 293 19 90 3 33 323 150006 150297 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 35606 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
17862613 17862613 PRJDB9741_P_NODE_10075_length_207_cov_3.145570_g9758_i0 PRJDB9741 10075 207 3.14557 6.5113299 Prasiola crispa 173492 Plants Plants 287 4.56e-73   NTclustered gi|806639636|gb|KR017749.1| 173492 g9758 i0 91.787 115.502415458937 207 15 99 2 2 207 716 921 Prasiola crispa clone Contig2 chloroplast sequence blastn 23909 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
17862699 17862699 PRJDB9741_P_NODE_2095_length_521_cov_2.889831_g1785_i0 PRJDB9741 2095 521 2.889831 15.05601951 Monoraphidium neglectum 145388 Plants Plants 209 2.86e-49   NTclustered gi|926773763|ref|XM_014039902.1| 145388 g1785 i0 80.769 27.1746641074856 286 39 53 15 3 280 212 489 Monoraphidium neglectum 60S ribosomal protein L19-2 mRNA blastn 14158 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
17862886 17862886 PRJDB9741_P_NODE_6135_length_254_cov_1.243902_g5818_i0 PRJDB9741 6135 254 1.243902 3.15951108 Chlorella variabilis 554065 Plants Plants 167 7.889999999999999e-37   NTclustered gi|552813526|ref|XM_005843910.1| 554065 g5818 i0 87.075 52.7086614173228 147 19 58 0 2 148 521 667 Chlorella variabilis 40S ribosomal protein S5 (CHLNCDRAFT_37294) mRNA, complete cds blastn 13388 167 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
20411697 20411697 PRJDB9741_P_NODE_6017_length_256_cov_2.328502_g5700_i0 PRJDB9741 6017 256 2.328502 5.96096512 Prasiola crispa 173492 Plants Plants 377 3.38e-100   NTclustered gi|806639636|gb|KR017749.1| 173492 g5700 i0 93.411 119.1640625 258 11 99 5 4 256 3138 2882 Prasiola crispa clone Contig2 chloroplast sequence blastn 30506 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;