RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJDB4941" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4941 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5112727 5112727 PRJDB4941_P_NODE_28665_length_186_cov_2.656934_g27897_i0 PRJDB4941 28665 186 2.656934 4.94189724 Haloferula helveola 490095 Bacteria Bacteria 137 4.27e-28   NTclustered gi|2647781590|dbj|AP024702.1| 490095 g27897 i0 81.503 7.16129032258065 173 26 91 6 14 183 2548531 2548700 Haloferula helveola CN-1 DNA, complete genome blastn 1332 137 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula helveola
7662744 7662744 PRJDB4941_P_NODE_31167_length_178_cov_1.209302_g30399_i0 PRJDB4941 31167 178 1.209302 2.15255756 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 113 6.81e-21   NTclustered gi|2874254065|emb|OY970130.1| 412056 g30399 i0 80.405 1.67415730337079 148 29 83 0 17 164 2866916 2867063 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 298 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
10213191 10213191 PRJDB4941_P_NODE_28249_length_188_cov_1.496403_g27481_i0 PRJDB4941 28249 188 1.496403 2.81323764 Opitutus terrae 107709 Bacteria Bacteria 117 5.63e-22   NTclustered gi|177839040|gb|CP001032.1| 452637 g27481 i0 85.586 0.590425531914894 111 16 59 0 66 176 2020382 2020272 Opitutus terrae PB90-1, complete genome blastn 111 117 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
11488205 11488205 PRJDB4941_P_NODE_21870_length_217_cov_1.476190_g21102_i0 PRJDB4941 21870 217 1.47619 3.2033323 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 132 2.39e-26   NTclustered gi|2874254065|emb|OY970130.1| 412056 g21102 i0 78.605 0.990783410138249 215 35 96 7 1 209 4044533 4044742 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 215 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
12764135 12764135 PRJDB4941_P_NODE_41951_length_154_cov_2.085714_g41183_i0 PRJDB4941 41951 154 2.085714 3.21199956 Opitutus terrae 107709 Bacteria Bacteria 141 2.62e-29   NTclustered gi|177839040|gb|CP001032.1| 452637 g41183 i0 83.784 9.06493506493507 148 24 96 0 3 150 1089325 1089472 Opitutus terrae PB90-1, complete genome blastn 1396 141 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
16587491 16587491 PRJDB4941_P_NODE_4754_length_628_cov_2.804836_g4003_i0 PRJDB4941 4754 628 2.804836 17.61437008 Synoicihabitans lomoniglobus 2909285 Bacteria Bacteria 60.2 3.73e-4   NTclustered gi|2452067159|gb|CP119075.1| 2909285 g4003 i0 100 0.0509554140127389 32 0 5 0 30 61 222775 222806 Synoicihabitans lomoniglobus strain LMO-M01 chromosome, complete genome blastn 32 60.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Synoicihabitans Synoicihabitans lomoniglobus
20108122 20108122 PRJDB4941_P_NODE_25896_length_197_cov_2.108108_g25128_i0 PRJDB4941 25896 197 2.108108 4.15297276 Opitutaceae 134623 Bacteria Bacteria 239 1.22e-58   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g25128 i0 88.718 6.77157360406091 195 22 99 0 1 195 4843191 4842997 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 1334 239 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
20411115 20411115 PRJDB4941_P_NODE_34517_length_169_cov_0.866667_g33749_i0 PRJDB4941 34517 169 0.866667 1.46466723 Opitutus terrae 107709 Bacteria Bacteria 156 1.05e-33   NTclustered gi|177839040|gb|CP001032.1| 452637 g33749 i0 85.43 0.893491124260355 151 20 88 2 10 158 1106456 1106606 Opitutus terrae PB90-1, complete genome blastn 151 156 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;