RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJDB4941" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4941 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1284921 1284921 PRJDB4941_P_NODE_5262_length_579_cov_2.209434_g4501_i0 PRJDB4941 5262 579 2.209434 12.79262286 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 285 5.179999999999999e-72   NTclustered gi|1800329609|gb|MN417951.1| 104777 g4501 i0 78.829 2.77374784110535 444 78 75 16 130 564 9825 10261 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 1606 285 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
2560089 2560089 PRJDB4941_P_NODE_21643_length_218_cov_2.189349_g20875_i0 PRJDB4941 21643 218 2.189349 4.77278082 Philodina citrina 468664 Rotifera other_Eukaryota 348 2.19e-91   NTclustered gi|407227484|emb|FR856884.1| 468664 g20875 i0 95.413 4.02293577981651 218 10 100 0 1 218 2108 2325 Philodina citrina complete mitochondrial genome blastn 877 348 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
3836290 3836290 PRJDB4941_P_NODE_1644_length_1497_cov_14.820442_g1138_i0 PRJDB4941 1644 1497 14.820442 221.86201674 Brachionus rubens 392764 Rotifera other_Eukaryota 900 0   NTclustered gi|632795131|gb|KJ489418.1| 392764 g1138 i0 78.138 23.6332665330661 1482 278 97 37 14 1466 5600 7064 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 35379 900 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
19135562 19135562 PRJDB4941_P_NODE_1216_length_1999_cov_6.654359_g821_i0 PRJDB4941 1216 1999 6.654359 133.02063641 Brachionus rubens 392764 Rotifera other_Eukaryota 797 0   NTclustered gi|632795126|gb|KJ489417.1| 392764 g821 i0 80.488 41.4672336168084 1066 186 53 15 102 1156 1055 1 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 82893 797 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
19135658 19135658 PRJDB4941_P_NODE_1656_length_1487_cov_16.079277_g1146_i0 PRJDB4941 1656 1487 16.079277 239.09884899 Asplanchna sp. 3231738 Rotifera other_Eukaryota 1251 0   NTclustered gi|2778092484|gb|PP988072.1| 3231738 g1146 i0 82.722 48.1526563550773 1418 233 95 10 74 1485 1506 95 Asplanchna sp. chromosome II mitochondrion, complete sequence blastn 71603 1251 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;