RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB4941" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4941 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8937223 8937223 PRJDB4941_P_NODE_22608_length_213_cov_1.237805_g21840_i0 PRJDB4941 22608 213 1.237805 2.63652465 Mytilus californianus 6549 Mollusca Mollusca 200 6.33e-47   NTclustered gi|2334616260|ref|XM_052239736.1| 6549 g21840 i0 83.568 32.3521126760563 213 35 100 0 1 213 334 546 PREDICTED: Mytilus californianus ras-related protein Rab-10-like (LOC127731014), mRNA blastn 6891 200 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
15312441 15312441 PRJDB4941_P_NODE_24213_length_205_cov_1.333333_g23445_i0 PRJDB4941 24213 205 1.333333 2.73333265 Octopus sinensis 2607531 Mollusca Mollusca 54.7 0.005   NTclustered gi|1914664621|ref|XM_036504900.1| 2607531 g23445 i0 96.875 0.15609756097561 32 1 16 0 165 196 367 398 PREDICTED: Octopus sinensis uncharacterized LOC118764308 (LOC118764308), mRNA blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus sinensis
22962310 22962310 PRJDB4941_P_NODE_28299_length_188_cov_1.338129_g27531_i0 PRJDB4941 28299 188 1.338129 2.51568252 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.001   NTclustered gi|2912998015|dbj|AP039603.1| 145626 g27531 i0 100 1.36702127659574 30 0 16 0 3 32 13450676 13450647 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 22, sequence blastn 257 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24236531 24236531 PRJDB4941_P_NODE_6920_length_469_cov_2.195238_g6152_i0 PRJDB4941 6920 469 2.195238 10.29566622 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.046   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g6152 i0 100 0.656716417910448 28 0 6 0 219 246 24543521 24543548 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 308 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;