RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB4941" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4941 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10311 10311 PRJDB4941_P_NODE_24781_length_202_cov_1.908497_g24013_i0 PRJDB4941 24781 202 1.908497 3.85516394 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 241 3.5e-59   NTclustered gi|2874253789|emb|OY969773.1| 412054 g24013 i0 88.406 7.39108910891089 207 14 100 6 1 202 421937 422138 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 1493 241 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12763766 12763766 PRJDB4941_P_NODE_21631_length_218_cov_2.497041_g20863_i0 PRJDB4941 21631 218 2.497041 5.44354938 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 93.5 1.14e-14   NTclustered gi|575456455|gb|CP007128.1| 861299 g20863 i0 82.569 1.61467889908257 109 16 50 3 103 210 810540 810646 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 352 93.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
19135689 19135689 PRJDB4941_P_NODE_17976_length_244_cov_1.528205_g17208_i0 PRJDB4941 17976 244 1.528205 3.7288202 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 143 1.27e-29   NTclustered gi|575456455|gb|CP007128.1| 861299 g17208 i0 79.327 0.852459016393443 208 39 84 4 39 244 1621969 1621764 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 208 143 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;