RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4470 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1283971 1283971 PRJDB4470_P_NODE_65782_length_232_cov_1.103825_g64627_i0 PRJDB4470 65782 232 1.103825 2.560874 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 230 8.929999999999999e-56   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g64627 i0 84.848 37.9353448275862 231 32 99 3 1 230 3047922 3047694 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 8801 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
3835880 3835880 PRJDB4470_P_NODE_67284_length_227_cov_3.129213_g66129_i0 PRJDB4470 67284 227 3.129213 7.10331351 Lacunisphaera limnophila 1838286 Bacteria Bacteria 54.7 0.006   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g66129 i0 100 0.127753303964758 29 0 13 0 178 206 1818139 1818111 Lacunisphaera limnophila strain IG16b, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
7662053 7662053 PRJDB4470_P_NODE_67487_length_227_cov_1.432584_g66332_i0 PRJDB4470 67487 227 1.432584 3.25196568 Fontisphaera persica 2974023 Bacteria Bacteria 231 2.4199999999999997e-56   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g66332 i0 85.345 12.9471365638767 232 24 100 10 1 227 3862168 3862394 Fontisphaera persica strain B-154 chromosome, complete genome blastn 2939 231 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
8936475 8936475 PRJDB4470_P_NODE_42948_length_326_cov_2.870036_g41795_i0 PRJDB4470 42948 326 2.870036 9.35631736 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 569 6.839999999999998e-158   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g41795 i0 98.16 163.70245398773 326 6 100 0 1 326 345 670 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 53367 569 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
16586267 16586267 PRJDB4470_P_NODE_3134_length_1280_cov_15.156783_g2697_i0 PRJDB4470 3134 1280 15.156783 194.0068224 Fontisphaera persica 2974023 Bacteria Bacteria 1085 0   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g2697 i0 85.377 168.49453125 1060 139 82 10 179 1225 3862490 3861434 Fontisphaera persica strain B-154 chromosome, complete genome blastn 215673 1085 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
17861091 17861091 PRJDB4470_P_NODE_17935_length_574_cov_6.099048_g16864_i0 PRJDB4470 17935 574 6.099048 35.00853552 Prosthecobacter fusiformis 48464 Bacteria Bacteria 244 8.71e-60   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g16864 i0 78.607 247.905923344948 402 63 67 16 50 436 582 189 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 142298 244 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;