RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4470 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14037934 14037934 PRJDB4470_P_NODE_84832_length_190_cov_2.517730_g83677_i0 PRJDB4470 84832 190 2.51773 4.783687 Lecane bulla 96446 Rotifera other_Eukaryota 239 1.17e-58   NTclustered gi|61200802|gb|AY829083.1| 96446 g83677 i0 89.231 48.1368421052632 195 15 100 2 1 190 1960 1767 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 9146 239 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
17559220 17559220 PRJDB4470_P_NODE_31874_length_403_cov_2.016949_g30727_i0 PRJDB4470 31874 403 2.016949 8.12830447 Eurotatoria 2816136 Rotifera other_Eukaryota 671 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g30727 i0 98.177 49.4813895781638 384 7 95 0 20 403 2308 1925 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 19941 676 0.992603550295858 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
20107965 20107965 PRJDB4470_P_NODE_79916_length_199_cov_1.646667_g78761_i0 PRJDB4470 79916 199 1.646667 3.27686733 Ploima 84394 Rotifera other_Eukaryota 300 5.5900000000000004e-77   NTclustered gi|61200802|gb|AY829083.1| 96446 g78761 i0 93.939 23.9597989949749 198 12 99 0 1 198 1694 1497 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 4768 300 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;