RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3835317 3835317 PRJDB4470_P_NODE_121104_length_163_cov_0.885965_g119949_i0 PRJDB4470 121104 163 0.885965 1.44412295 Pseudomyxococcus hansupus 1297742 Bacteria Bacteria 84.2 4.82e-12   NTclustered gi|891158403|gb|CP012109.1| 1297742 g119949 i0 77.576 1.01226993865031 165 20 97 11 1 158 5983489 5983643 Myxococcus hansupus strain mixupus chromosome, complete genome blastn 165 84.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pseudomyxococcus Pseudomyxococcus hansupus
10211946 10211946 PRJDB4470_P_NODE_113489_length_165_cov_0.870690_g112334_i0 PRJDB4470 113489 165 0.87069 1.4366385 Sorangium cellulosum 56 Bacteria Bacteria 52.8 0.014   NTclustered gi|1338588479|gb|CP012673.1| 56 g112334 i0 100 0.16969696969697 28 0 17 0 66 93 10162141 10162114 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
11184779 11184779 PRJDB4470_P_NODE_99469_length_170_cov_1.644628_g98314_i0 PRJDB4470 99469 170 1.644628 2.7958676 Archangiaceae 39 Bacteria Bacteria 187 3.74e-43   NTclustered gi|2244675|emb|X87291.1| 41 g98314 i0 87.654 279.552941176471 162 19 95 1 10 170 58 219 S.aurantiaca 23S rRNA gene blastn 47524 187 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
14037120 14037120 PRJDB4470_P_NODE_108492_length_166_cov_0.871795_g107337_i0 PRJDB4470 108492 166 0.871795 1.4471797 Polyangium aurulentum 2567896 Bacteria Bacteria 130 6.240000000000001e-26   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g107337 i0 82.39 0.957831325301205 159 19 93 9 10 164 4438516 4438363 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 159 130 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
16586701 16586701 PRJDB4470_P_NODE_79674_length_199_cov_7.893333_g78519_i0 PRJDB4470 79674 199 7.893333 15.70773267 uncultured Phaselicystis sp. 876107 Bacteria Bacteria 257 3.4100000000000005e-64   NTclustered gi|310434332|gb|HM928546.1| 876107 g78519 i0 92.737 83.6331658291457 179 12 90 1 21 199 66 243 Uncultured Phaselicystis sp. clone GG5QJA201DYEMP 16S ribosomal RNA gene, partial sequence blastn 16643 257 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Phaselicystidaceae Phaselicystis uncultured Phaselicystis sp.
23933693 23933693 PRJDB4470_P_NODE_13479_length_670_cov_3.885668_g12505_i0 PRJDB4470 13479 670 3.885668 26.0339756 Pendulispora 3375062 Bacteria Bacteria 990 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g12505 i0 93.443 152.986567164179 671 39 100 3 1 670 7289534 7288868 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 102501 990 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;