RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4470 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1283629 1283629 PRJDB4470_P_NODE_28942_length_430_cov_2.078740_g27802_i0 PRJDB4470 28942 430 2.07874 8.938582 Biomphalaria glabrata 6526 Mollusca Mollusca 52.8 0.041   NTclustered gi|2502153485|ref|XM_056022348.1| 6526 g27802 i0 100 0.195348837209302 28 0 7 0 402 429 5189 5216 PREDICTED: Biomphalaria glabrata apoptosis-resistant E3 ubiquitin protein ligase 1-like (LOC106061940), transcript variant X2, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
3836039 3836039 PRJDB4470_P_NODE_86204_length_188_cov_2.201439_g85049_i0 PRJDB4470 86204 188 2.201439 4.13870532 Aplysia californica 6500 Mollusca Mollusca 335 1.4299999999999995e-87   NTclustered gi|325297131|ref|NM_001204646.1| 6500 g85049 i0 99.457 81.5691489361702 184 1 98 0 5 188 405 222 Aplysia californica polyubiquitin-C (LOC101860494), mRNA blastn 15335 335 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;