RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9437 9437 PRJDB4470_P_NODE_33541_length_389_cov_3.502941_g32392_i0 PRJDB4470 33541 389 3.502941 13.62644049 Coremiostelium polycephalum 142831 Evosea other_Eukaryota 93.5 2.19e-14   NTclustered gi|85062629|gb|DQ340387.1| 142831 g32392 i0 88.312 20.853470437018 77 9 20 0 31 107 12524 12448 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 8112 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
1284196 1284196 PRJDB4470_P_NODE_91742_length_180_cov_1.938931_g90587_i0 PRJDB4470 91742 180 1.938931 3.4900758 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.015   NTclustered gi|831786596|ref|XM_012902707.1| 1410327 g90587 i0 100 0.155555555555556 28 0 16 0 29 56 2881 2908 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
22960960 22960960 PRJDB4470_P_NODE_102339_length_168_cov_0.873950_g101184_i0 PRJDB4470 102339 168 0.87395 1.468236 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.014   NTclustered gi|66825574|ref|XM_641050.1| 352472 g101184 i0 100 0.166666666666667 28 0 17 0 61 88 384 411 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0269646) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;