RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17861179 17861179 PRJDB4470_P_NODE_26435_length_455_cov_4.285714_g25298_i0 PRJDB4470 26435 455 4.285714 19.4999987 Crithidia brevicula 1539007 Euglenozoa other_Eukaryota 645 1.5899999999999993e-180   NTclustered gi|1002342151|gb|KT944301.1| 1539007 g25298 i0 93.409 138.002197802198 440 22 95 6 22 455 1307 1745 Crithidia brevicula strain Nbr 28S ribosomal RNA gene, partial sequence blastn 62791 645 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia brevicula
22658487 22658487 PRJDB4470_P_NODE_95358_length_175_cov_1.896825_g94203_i0 PRJDB4470 95358 175 1.896825 3.31944375 Trypanosoma 5690 Euglenozoa other_Eukaryota 291 2.8699999999999993e-74   NTclustered gi|162233|gb|M63699.1|TRBRGS1 5693 g94203 i0 96.591 130.897142857143 176 5 100 1 1 175 55 230 T.cruzi S3 ribosomal RNA gene blastn 22907 291 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;