RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5111628 5111628 PRJDB4470_P_NODE_126505_length_155_cov_2.877358_g125350_i0 PRJDB4470 126505 155 2.877358 4.4599049 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 110 7.46e-20   NTclustered gi|2893358404|emb|OZ220695.1| 3022862 g125350 i0 83.065 9.11612903225806 124 17 79 4 1 122 3096617 3096496 MAG: Tepidiformaceae bacterium isolate d5d77930-af5a-4506-8b4e-3340c6a42e1f genome assembly, chromosome: 1 blastn 1413 110 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
6387301 6387301 PRJDB4470_P_NODE_104986_length_167_cov_0.864407_g103831_i0 PRJDB4470 104986 167 0.864407 1.44355969 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 167 4.79e-37   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g103831 i0 93.694 4.52694610778443 111 7 66 0 1 111 259290 259180 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 756 167 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
8936952 8936952 PRJDB4470_P_NODE_99928_length_169_cov_2.975000_g98773_i0 PRJDB4470 99928 169 2.975 5.02775 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 204 3.68e-48   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g98773 i0 90.385 7.36686390532544 156 13 92 2 15 169 274524 274370 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 1245 204 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
17861110 17861110 PRJDB4470_P_NODE_19695_length_543_cov_2.716599_g18601_i0 PRJDB4470 19695 543 2.716599 14.75113257 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 647 0   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g18601 i0 88.868 193.780847145488 530 53 97 5 17 543 273685 274211 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 105223 647 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;