RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
981188 981188 PRJDB4470_P_NODE_104281_length_167_cov_0.881356_g103126_i0 PRJDB4470 104281 167 0.881356 1.47186452 Campylobacter 194 Bacteria Bacteria 259 7.69e-65   NTclustered gi|1483583497|emb|LT631421.1| 204 g103126 i0 94.643 2.01197604790419 168 7 100 2 1 167 40892 40726 Campylobacter showae genome assembly, chromosome: I blastn 336 259 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
8936373 8936373 PRJDB4470_P_NODE_30908_length_411_cov_3.323204_g29763_i0 PRJDB4470 30908 411 3.323204 13.65836844 Malaciobacter marinus 505249 Bacteria Bacteria 54.7 0.011   NTclustered gi|1474785413|gb|CP032101.1| 505249 g29763 i0 100 0.0705596107055961 29 0 7 0 322 350 2761273 2761301 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
15311590 15311590 PRJDB4470_P_NODE_35713_length_373_cov_1.484568_g34561_i0 PRJDB4470 35713 373 1.484568 5.53743864 uncultured Aliarcobacter sp. 2321118 Bacteria Bacteria 466 1.07e-126   NTclustered gi|2621785459|emb|OY781917.1| 2321118 g34561 i0 89.239 65.1367292225201 381 30 99 3 3 373 149418 149797 MAG: uncultured Aliarcobacter sp. isolate 35e71162-57ce-4606-8f28-3f72018c63bd genome assembly, chromosome: 2 blastn 24296 466 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter uncultured Aliarcobacter sp.
22961724 22961724 PRJDB4470_P_NODE_73119_length_213_cov_1.902439_g71964_i0 PRJDB4470 73119 213 1.902439 4.05219507 Helicobacter pylori 210 Bacteria Bacteria 54.7 0.005   NTclustered gi|2641914139|gb|CP078365.1| 210 g71964 i0 100 0.136150234741784 29 0 14 0 49 77 1021678 1021706 Helicobacter pylori strain HpGP-SGP-024 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
22961928 22961928 PRJDB4470_P_NODE_98399_length_171_cov_2.131148_g97244_i0 PRJDB4470 98399 171 2.131148 3.64426308 Arcobacter ellisii 913109 Bacteria Bacteria 278 2.17e-70   NTclustered gi|1474793334|gb|CP032097.1| 913109 g97244 i0 95.906 63.7953216374269 171 7 100 0 1 171 421694 421524 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 10909 278 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;