RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14037096 14037096 PRJDB4470_P_NODE_105652_length_167_cov_0.864407_g104497_i0 PRJDB4470 105652 167 0.864407 1.44355969 Bdellovibrio sp. HCB-162 3394234 Bacteria Bacteria 193 7.909999999999999e-45   NTclustered gi|2898207634|gb|CP178861.1| 3394234 g104497 i0 87.425 1 167 21 100 0 1 167 800386 800552 Bdellovibrio sp. HCB-162 chromosome, complete genome blastn 167 193 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB-162
17860901 17860901 PRJDB4470_P_NODE_108575_length_166_cov_0.871795_g107420_i0 PRJDB4470 108575 166 0.871795 1.4471797 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 121 3.76e-23   NTclustered gi|2800914199|gb|CP168971.1| 959 g107420 i0 80.921 1.16867469879518 152 29 92 0 3 154 2455235 2455386 Bdellovibrio bacteriovorus strain Bd16 chromosome, complete genome blastn 194 121 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
21686196 21686196 PRJDB4470_P_NODE_54798_length_269_cov_1.850000_g53643_i0 PRJDB4470 54798 269 1.85 4.9765 Bacteriovorax stolpii 960 Bacteria Bacteria 396 9.88e-106   NTclustered gi|1700689994|gb|CP030035.1| 960 g53643 i0 93.284 240.28624535316 268 18 99 0 1 268 1661418 1661151 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 64637 396 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;