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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJDB4470" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 21 ✖

bioproject 1

  • PRJDB4470 · 21 ✖

analysis 1

  • blastn · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1283533 1283533 PRJDB4470_P_NODE_18642_length_561_cov_12.859375_g17557_i0 PRJDB4470 18642 561 12.859375 72.14109375 Coccomyxa subellipsoidea 248742 Plants Plants 196 2.41e-45   NTclustered gi|545374848|ref|XM_005651606.1| 574566 g17557 i0 82.727 4.9144385026738 220 38 39 0 116 335 94 313 Coccomyxa subellipsoidea C-169 ribosomal protein S26 component of cytosolic 80S ribosome and 40S small subunit mRNA blastn 2757 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
2559411 2559411 PRJDB4470_P_NODE_46983_length_304_cov_2.309804_g45830_i0 PRJDB4470 46983 304 2.309804 7.02180416 Prototheca wickerhamii 3111 Plants Plants 481 3.05e-131   NTclustered gi|1333900617|gb|MG827363.1| 3111 g45830 i0 97.183 71.4046052631579 284 8 93 0 1 284 288 5 Prototheca wickerhamii isolate 73657-clone2 large subunit ribosomal RNA gene, partial sequence blastn 21707 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
2559784 2559784 PRJDB4470_P_NODE_92943_length_178_cov_27.286822_g91788_i0 PRJDB4470 92943 178 27.286822 48.57054316 Chloroidium sp. KL-2023a 3031248 Plants Plants 274 2.95e-69   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g91788 i0 98.701 26.7247191011236 154 2 87 0 21 174 219905 220058 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 4757 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a
3835674 3835674 PRJDB4470_P_NODE_43684_length_322_cov_1.945055_g42531_i0 PRJDB4470 43684 322 1.945055 6.2630771 Chlamydomonas leiostraca 1034604 Plants Plants 91.6 6.4e-14   NTclustered gi|788229420|ref|NC_026573.1| 1034604 g42531 i0 80.328 0.537267080745342 122 22 38 2 103 223 4280 4160 Chlamydomonas leiostraca strain SAG 11-49 mitochondrion, complete genome blastn 173 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas leiostraca
7359151 7359151 PRJDB4470_P_NODE_90706_length_182_cov_1.150376_g89551_i0 PRJDB4470 90706 182 1.150376 2.09368432 Coccomyxa 41891 Plants Plants 230 6.659999999999998e-56   NTclustered gi|1360638129|gb|AC277064.1| 574566 g89551 i0 89.56 100.21978021978 182 18 100 1 1 182 1720 1540 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 18240 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
7661661 7661661 PRJDB4470_P_NODE_26687_length_452_cov_12.300248_g25549_i0 PRJDB4470 26687 452 12.300248 55.59712096 Chlorella variabilis 554065 Plants Plants 250 1.45e-61   NTclustered gi|552822227|ref|XM_005845998.1| 554065 g25549 i0 81.21 8.78318584070797 314 56 69 1 34 344 359 46 Chlorella variabilis hypothetical protein (CHLNCDRAFT_14518) mRNA, partial cds blastn 3970 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8936439 8936439 PRJDB4470_P_NODE_38748_length_351_cov_6.066225_g37596_i0 PRJDB4470 38748 351 6.066225 21.29244975 Chlamydomonas reinhardtii 3055 Plants Plants 265 3.91e-66   NTclustered gi|2082244625|ref|XM_001698617.2| 3055 g37596 i0 82.623 5.16239316239316 305 47 86 6 46 348 561 261 Chlamydomonas reinhardtii ribosomal protein S12 (CHLRE_04g214503v5), mRNA blastn 1812 265 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
11184712 11184712 PRJDB4470_P_NODE_79949_length_199_cov_1.433333_g78794_i0 PRJDB4470 79949 199 1.433333 2.85233267 Chlorellaceae 35461 Plants Plants 202 1.62e-47   NTclustered gi|1401669229|gb|MH295835.1| 2219871 g78794 i0 87.634 62.3768844221105 186 8 93 6 1 186 1446 1276 Chlorella endosymbiont of Stentor polymorphus 28S ribosomal RNA gene, partial sequence blastn 12413 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella endosymbiont of Stentor polymorphus
11487230 11487230 PRJDB4470_P_NODE_19790_length_541_cov_10.343496_g18695_i0 PRJDB4470 19790 541 10.343496 55.95831336 Auxenochlorella protothecoides 3075 Plants Plants 366 1.6699999999999993e-96   NTclustered gi|760446390|ref|XM_011401962.1| 3075 g18695 i0 82.326 25.0702402957486 430 68 79 8 22 447 1572 1997 Auxenochlorella protothecoides 60S ribosomal protein L10 partial mRNA blastn 13563 366 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
12460483 12460483 PRJDB4470_P_NODE_32850_length_395_cov_2.471098_g31702_i0 PRJDB4470 32850 395 2.471098 9.7608371 Chlorophyta 3041 Plants Plants 501 3.12e-137   NTclustered gi|6120005|gb|AF183465.1| 56002 g31702 i0 91.922 91.2936708860759 359 28 91 1 1 359 1857 1500 Chaetopeltis orbicularis strain UTEX 422 28S ribosomal RNA gene, partial sequence blastn 36061 501 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetopeltidales Chaetopeltidaceae Chaetopeltis Chaetopeltis orbicularis
12762683 12762683 PRJDB4470_P_NODE_118131_length_163_cov_1.149123_g116976_i0 PRJDB4470 118131 163 1.149123 1.87307049 Picochlorum sp. 2812594 Plants Plants 215 1.64e-51   NTclustered gi|2632235342|gb|OR922724.1| 2812594 g116976 i0 90.798 100.01226993865 163 12 100 1 1 163 3446 3287 Picochlorum sp. strain AGSB0210 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16302 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp.
14037615 14037615 PRJDB4470_P_NODE_50672_length_286_cov_7.759494_g49519_i0 PRJDB4470 50672 286 7.759494 22.19215284 Nannochloris normandinae 926285 Plants Plants 481 2.84e-131   NTclustered gi|922575245|gb|JQ921007.1| 926285 g49519 i0 99.248 98.472027972028 266 2 93 0 1 266 772 507 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 28163 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
14037757 14037757 PRJDB4470_P_NODE_6552_length_937_cov_17.760135_g5853_i0 PRJDB4470 6552 937 17.760135 166.41246495 Auxenochlorella protothecoides 3075 Plants Plants 420 2.2499999999999996e-112   NTclustered gi|760441808|ref|XM_011399671.1| 3075 g5853 i0 79.932 8.20490928495197 588 105 62 11 341 920 1131 549 Auxenochlorella protothecoides Pyruvate dehydrogenase E1 component subunit beta partial mRNA blastn 7688 420 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
19135034 19135034 PRJDB4470_P_NODE_41596_length_334_cov_2.291228_g40444_i0 PRJDB4470 41596 334 2.291228 7.65270152 Ignatius tetrasporus 231078 Plants Plants 185 2.98e-42   NTclustered gi|371782089|emb|HE610121.1| 231078 g40444 i0 94.958 35.1706586826347 119 5 35 1 13 130 2331 2449 Ignatius tetrasporus 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2012 blastn 11747 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ignatiales Ignatiaceae Ignatius Ignatius tetrasporus
19135298 19135298 PRJDB4470_P_NODE_70796_length_219_cov_0.776471_g69641_i0 PRJDB4470 70796 219 0.776471 1.70047149 Trebouxia sp. LC-2007a 440082 Plants Plants 351 1.7099999999999995e-92   NTclustered gi|146160951|gb|EF532288.1| 440082 g69641 i0 98.02 70.7579908675799 202 4 92 0 1 202 202 1 Trebouxia photobiont LC-2007a cytochrome b6 (petB) gene, partial cds; chloroplast blastn 15496 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. LC-2007a
21685808 21685808 PRJDB4470_P_NODE_13358_length_673_cov_17.719551_g12390_i0 PRJDB4470 13358 673 17.719551 119.25257823 Monoraphidium neglectum 145388 Plants Plants 289 4.7e-73   NTclustered gi|926774123|ref|XM_014040082.1| 145388 g12390 i0 78.414 51.444279346211 454 90 67 8 82 531 450 1 Monoraphidium neglectum 40S ribosomal protein S13-2 mRNA blastn 34622 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
21686410 21686410 PRJDB4470_P_NODE_78998_length_201_cov_1.342105_g77843_i0 PRJDB4470 78998 201 1.342105 2.69763105 uncultured Apatococcus 1229086 Plants Plants 372 1.18e-98   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g77843 i0 100 90.6517412935323 201 0 100 0 1 201 1290 1490 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 18221 372 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
22658440 22658440 PRJDB4470_P_NODE_83618_length_192_cov_2.461538_g82463_i0 PRJDB4470 83618 192 2.461538 4.72615296 root 1 Root_unresolved Root_unresolved 270 4.19e-68   NTclustered gi|2564977477|gb|OR458451.1| 3072 g82463 i0 94.798 90.1145833333333 173 9 90 0 20 192 612 784 Pseudochlorella pringsheimii isolate Geu-1 large subunit ribosomal RNA gene, partial sequence blastn 17302 270 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella pringsheimii
24235151 24235151 PRJDB4470_P_NODE_1940_length_1525_cov_47.708672_g1638_i0 PRJDB4470 1940 1525 47.708672 727.557248 Colemanosphaera charkowiensis 51706 Plants Plants 76.8 9.3e-9   NTclustered gi|1808707092|gb|MH511733.1| 51706 g1638 i0 97.727 0.718688524590164 44 1 3 0 1333 1376 6919 6876 Colemanosphaera charkowiensis plastid, complete genome blastn 1096 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Colemanosphaera Colemanosphaera charkowiensis
24235521 24235521 PRJDB4470_P_NODE_62360_length_242_cov_1.854922_g61205_i0 PRJDB4470 62360 242 1.854922 4.48891124 Auxenochlorella protothecoides 3075 Plants Plants 318 1.95e-82   NTclustered gi|760440844|ref|XM_011399189.1| 3075 g61205 i0 90.456 95.3760330578512 241 23 99 0 1 241 424 184 Auxenochlorella protothecoides Ubiquitin-40S ribosomal protein S27a-1 partial mRNA blastn 23081 318 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
25207364 25207364 PRJDB4470_P_NODE_14440_length_646_cov_4.742044_g13437_i0 PRJDB4470 14440 646 4.742044 30.63360424 Coccomyxa 41891 Plants Plants 758 0   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g13437 i0 87.944 100.445820433437 647 73 100 4 1 646 3903 4545 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 64888 758 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;