RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16585687 16585687 PRJDB3785_S_NODE_24014_length_166_cov_0.871795_g23861_i0 PRJDB3785 24014 166 0.871795 1.4471797 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 80.5 6.38e-11   NTclustered gi|294905936|ref|XM_002777668.1| 423536 g23861 i0 94.231 0.626506024096386 52 3 31 0 95 146 405 354 Perkinsus marinus ATCC 50983 60s ribosomal protein l22, putative, mRNA blastn 104 80.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
21685414 21685414 PRJDB3785_S_NODE_23198_length_167_cov_0.864407_g23045_i0 PRJDB3785 23198 167 0.864407 1.44355969 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.37e-5   NTclustered gi|294955501|ref|XM_002788491.1| 423536 g23045 i0 94.737 0.227544910179641 38 2 23 0 15 52 169 132 Perkinsus marinus ATCC 50983 chaperone protein DNAK, putative, mRNA blastn 38 60.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;