RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
981160 981160 PRJDB3785_S_NODE_21421_length_172_cov_3.723577_g21268_i0 PRJDB3785 21421 172 3.723577 6.40455244 Leishmania 5658 Euglenozoa other_Eukaryota 189 1.0499999999999996e-43   NTclustered gi|8039172|emb|AL356456.1| 5664 g21268 i0 88.462 317.162790697674 156 18 91 0 17 172 85284 85129 Leishmania major Friedlin cosmid clones L9127,L3286,L3175,L8286,L7480, incomplete shotgun, assembled reads, with VERY preliminary annotation, complete sequence blastn 54552 189 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
4809101 4809101 PRJDB3785_S_NODE_21264_length_173_cov_1.233871_g21111_i0 PRJDB3785 21264 173 1.233871 2.13459683 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 137 3.8999999999999995e-28   NTclustered gi|2593252916|emb|OY748428.1| 5660 g21111 i0 85.496 27.3526011560694 131 19 76 0 3 133 1514952 1515082 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 34 blastn 4732 137 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
11486690 11486690 PRJDB3785_S_NODE_16890_length_191_cov_1.211268_g16737_i0 PRJDB3785 16890 191 1.211268 2.31352188 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 211 2.56e-50   NTclustered gi|226347420|gb|FJ807250.1| 127150 g16737 i0 87.432 91.9162303664921 183 23 96 0 5 187 1167 985 Rhynchomonas nasuta strain ATCC 50292 elongation factor 1 alpha mRNA, partial cds blastn 17556 211 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
15311044 15311044 PRJDB3785_S_NODE_5913_length_310_cov_2.157088_g5760_i0 PRJDB3785 5913 310 2.157088 6.6869728 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 398 3.2299999999999996e-106   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g5760 i0 89.873 134.654838709677 316 23 99 7 1 308 4802 4488 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 41743 398 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
17860605 17860605 PRJDB3785_S_NODE_17275_length_189_cov_1.428571_g17122_i0 PRJDB3785 17275 189 1.428571 2.69999919 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.016   NTclustered gi|1624749507|ref|XM_029025682.1| 67003 g17122 i0 92.105 0.201058201058201 38 2 20 1 1 37 2568 2605 Trypanosoma theileri uncharacterized protein (TM35_000142370), partial mRNA blastn 38 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
19134384 19134384 PRJDB3785_S_NODE_24496_length_165_cov_0.879310_g24343_i0 PRJDB3785 24496 165 0.87931 1.4508615 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 267 4.53e-67   NTclustered gi|1673141461|ref|XR_003828664.1| 83891 g24343 i0 95.758 109.860606060606 165 7 100 0 1 165 5215 5051 Trypanosoma conorhini 28S ribosomal RNA (Tco025E_06705), rRNA blastn 18127 267 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
23933617 23933617 PRJDB3785_S_NODE_26359_length_162_cov_1.159292_g26206_i0 PRJDB3785 26359 162 1.159292 1.87805304 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 158 2.78e-34   NTclustered gi|2414483|emb|Y00055.1| 5656 g26206 i0 96.809 83.9938271604938 94 3 58 0 1 94 8156 8063 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 13607 158 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
25207264 25207264 PRJDB3785_S_NODE_24400_length_165_cov_1.206897_g24247_i0 PRJDB3785 24400 165 1.206897 1.99138005 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 204 3.5999999999999995e-48   NTclustered gi|440222381|gb|JX030049.1| 5659 g24247 i0 89.157 95.5818181818182 166 15 100 3 1 165 20 183 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 15771 206 0.990291262135922 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;