RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2558746 2558746 PRJDB3785_S_NODE_3183_length_435_cov_3.409326_g3030_i0 PRJDB3785 3183 435 3.409326 14.8305681 Acanthamoeba culbertsoni 43142 Discosea other_Eukaryota 281 4.92e-71   NTclustered gi|53829553|gb|AY582829.1| 43142 g3030 i0 80.863 81.5126436781609 371 59 84 11 1 365 874 1238 Acanthamoeba culbertsoni ef1a gene, partial cds blastn 35458 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba culbertsoni
4809104 4809104 PRJDB3785_S_NODE_22644_length_168_cov_1.663866_g22491_i0 PRJDB3785 22644 168 1.663866 2.79529488 Acanthamoeba 5754 Discosea other_Eukaryota 161 2.25e-35   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g22491 i0 90.833 9.5 120 11 71 0 1 120 412 293 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 1596 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7661191 7661191 PRJDB3785_S_NODE_3107_length_440_cov_1.979540_g2955_i0 PRJDB3785 3107 440 1.97954 8.709976 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.3 1.17e-7   NTclustered gi|470394136|ref|XM_004334911.1| 1257118 g2955 i0 100 9.4 38 0 9 0 277 314 1687 1724 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096160), partial mRNA blastn 4136 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8935782 8935782 PRJDB3785_S_NODE_20328_length_176_cov_2.196850_g20175_i0 PRJDB3785 20328 176 2.19685 3.866456 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 78.7 2.45e-10   NTclustered gi|354720326|gb|HQ687485.1| 1105345 g20175 i0 89.062 1.73863636363636 64 5 36 2 81 143 904 966 Vexillifera bacillipedes strain CCAP 1590/1 small subunit ribosomal RNA gene, partial sequence blastn 306 78.7 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
11486862 11486862 PRJDB3785_S_NODE_5390_length_326_cov_1.361011_g5237_i0 PRJDB3785 5390 326 1.361011 4.43689586 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 241 6.09e-59   NTclustered gi|470514016|ref|XM_004352683.1| 1257118 g5237 i0 87.805 7.19325153374233 205 25 63 0 1 205 134 338 Acanthamoeba castellanii str. Neff ribosomal protein S19, putative (ACA1_067910), partial mRNA blastn 2345 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12762247 12762247 PRJDB3785_S_NODE_12151_length_219_cov_5.147059_g11998_i0 PRJDB3785 12151 219 5.147059 11.27205921 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 261 2.96e-65   NTclustered gi|470512968|ref|XM_004352512.1| 1257118 g11998 i0 90.404 85.7168949771689 198 19 90 0 22 219 1 198 Acanthamoeba castellanii str. Neff actin-1, putative (ACA1_361250), partial mRNA blastn 18772 261 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12762508 12762508 PRJDB3785_S_NODE_7171_length_280_cov_2.722944_g7018_i0 PRJDB3785 7171 280 2.722944 7.6242432000000004 Cochliopodium minus 313997 Discosea other_Eukaryota 326 1.38e-84   NTclustered gi|330902893|gb|JF298271.1| 313997 g7018 i0 90.612 86.7 245 23 88 0 33 277 857 1101 Cochliopodium minus clone 5202 actin gene, partial cds blastn 24276 326 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
16585742 16585742 PRJDB3785_S_NODE_3674_length_400_cov_1.777778_g3521_i0 PRJDB3785 3674 400 1.777778 7.111112 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 315 4.43e-81   NTclustered gi|470467440|ref|XM_004341747.1| 1257118 g3521 i0 81.771 78.8075 384 63 95 6 1 379 459 840 Acanthamoeba castellanii str. Neff guanine nucleotide-binding protein beta subunit, putative (ACA1_199990), partial mRNA blastn 31523 315 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17860531 17860531 PRJDB3785_S_NODE_11715_length_223_cov_1.172414_g11562_i0 PRJDB3785 11715 223 1.172414 2.61448322 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 95.3 3.24e-15   NTclustered gi|470519749|ref|XM_004353447.1| 1257118 g11562 i0 91.304 0.991031390134529 69 6 31 0 63 131 156 88 Acanthamoeba castellanii str. Neff ribosomal L29e protein family (ACA1_143310), partial mRNA blastn 221 95.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21685303 21685303 PRJDB3785_S_NODE_13618_length_209_cov_0.950000_g13465_i0 PRJDB3785 13618 209 0.95 1.9855 Paramoeba branchiphila 308475 Discosea other_Eukaryota 178 2.9e-40   NTclustered gi|226347442|gb|FJ807261.1| 308475 g13465 i0 83.598 62.9377990430622 189 29 90 2 19 206 734 547 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 13154 178 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
22960668 22960668 PRJDB3785_S_NODE_14099_length_206_cov_0.974522_g13946_i0 PRJDB3785 14099 206 0.974522 2.00751532 Paramoeba perurans 437603 Discosea other_Eukaryota 163 7.97e-36   NTclustered gi|2635491373|gb|OR923386.1| 437603 g13946 i0 81.592 53.6116504854369 201 33 97 4 1 199 478 280 Paramoeba perurans clone PPER_00013037 heat shock 90 mRNA, complete cds blastn 11044 163 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;