RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4809097 4809097 PRJDB3785_S_NODE_17984_length_186_cov_1.116788_g17831_i0 PRJDB3785 17984 186 1.116788 2.07722568 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 135 1.53e-27   NTclustered gi|505337|gb|L34027.1|PFAHSP86A 5833 g17831 i0 82.278 19.6720430107527 158 26 84 2 28 184 4595 4439 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds blastn 3659 135 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
6387003 6387003 PRJDB3785_S_NODE_13106_length_212_cov_1.564417_g12953_i0 PRJDB3785 13106 212 1.564417 3.31656404 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 167 6.379999999999999e-37   NTclustered gi|1027960071|ref|XM_735127.2| 31271 g12953 i0 85.897 57.4198113207547 156 22 74 0 35 190 1131 976 Plasmodium chabaudi chabaudi actin I, putative (PCHAS_1461600), partial mRNA blastn 12173 167 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
6387019 6387019 PRJDB3785_S_NODE_14366_length_204_cov_1.638710_g14213_i0 PRJDB3785 14366 204 1.6387100000000001 3.3429684 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 113 8.050000000000001e-21   NTclustered gi|1620141318|ref|XM_028676575.1| 85471 g14213 i0 86.408 21.2794117647059 103 14 50 0 101 203 40 142 Plasmodium relictum GTP-binding nuclear protein RAN/TC4, putative (RAN), partial mRNA blastn 4341 113 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
10211794 10211794 PRJDB3785_S_NODE_5329_length_328_cov_1.261649_g5176_i0 PRJDB3785 5329 328 1.261649 4.13820872 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.031   NTclustered gi|124806941|ref|XM_001350835.1| 36329 g5176 i0 100 0.0853658536585366 28 0 9 0 166 193 1770 1743 Plasmodium falciparum 3D7 conserved Plasmodium protein, unknown function (PF3D7_1248700), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;