RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJDB3785 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5111106 5111106 PRJDB3785_S_NODE_11825_length_222_cov_1.387283_g11672_i0 PRJDB3785 11825 222 1.387283 3.07976826 Chlamydomonas reinhardtii 3055 Plants Plants 137 5.279999999999999e-28   NTclustered gi|2082238142|ref|XM_043059158.1| 3055 g11672 i0 81.548 5.27477477477477 168 29 75 2 3 169 1300 1466 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g076350v5), mRNA blastn 1171 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5111233 5111233 PRJDB3785_S_NODE_20825_length_174_cov_5.976000_g20672_i0 PRJDB3785 20825 174 5.976 10.39824 Chlorochytrium lemnae 1199099 Plants Plants 161 2.33e-35   NTclustered gi|510020237|emb|HE860275.1| 1199099 g20672 i0 83.333 91.7241379310345 174 29 100 0 1 174 238 65 Chlorochytrium lemnae partial mRNA for actin (actin gene), culture collection CAUP:H6905 blastn 15960 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlorochytriaceae Chlorochytrium Chlorochytrium lemnae
15310871 15310871 PRJDB3785_S_NODE_18113_length_185_cov_1.500000_g17960_i0 PRJDB3785 18113 185 1.5 2.775 Chlamydomonas reinhardtii 3055 Plants Plants 185 1.49e-42   NTclustered gi|2082238142|ref|XM_043059158.1| 3055 g17960 i0 84.865 39.8108108108108 185 26 99 2 2 185 1351 1168 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g076350v5), mRNA blastn 7365 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21685456 21685456 PRJDB3785_S_NODE_27198_length_161_cov_0.910714_g27045_i0 PRJDB3785 27198 161 0.910714 1.46624954 Auxenochlorella protothecoides 3075 Plants Plants 99 1.69e-16   NTclustered gi|760447288|ref|XM_011402411.1| 3075 g27045 i0 85.263 65.2360248447205 95 14 59 0 1 95 1558 1652 Auxenochlorella protothecoides Peptidylprolyl isomerase domain and WD repeat-containing protein 1 partial mRNA blastn 10503 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
22960780 22960780 PRJDB3785_S_NODE_24719_length_165_cov_0.870690_g24566_i0 PRJDB3785 24719 165 0.87069 1.4366385 Volvox carteri 3067 Plants Plants 137 3.7e-28   NTclustered gi|302828639|ref|XM_002945841.1| 3068 g24566 i0 81.818 2.56363636363636 165 28 99 2 1 164 696 533 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_78914), mRNA blastn 423 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;