contig_metadata
11 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_clade = "FCB group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2256441 | 2256441 | PRJDB3785_S_NODE_8042_length_265_cov_1.222222_g7889_i0 | PRJDB3785 | 8042 | 265 | 1.222222 | 3.2388883 | Flavobacterium | 237 | Bacteria | Bacteria | 473 | 4.3599999999999987e-129 | NTclustered | gi|1003115209|gb|CP010992.1| | 996 | g7889 | i0 | 98.868 | 682.618867924528 | 265 | 3 | 100 | 0 | 1 | 265 | 473362 | 473626 | Flavobacterium columnare strain B185, complete genome | blastn | 180894 | 473 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium columnare | |
| 11486809 | 11486809 | PRJDB3785_S_NODE_27250_length_161_cov_0.910714_g27097_i0 | PRJDB3785 | 27250 | 161 | 0.910714 | 1.46624954 | Capnocytophaga granulosa | 45242 | Bacteria | Bacteria | 52.8 | 0.013 | NTclustered | gi|2831311145|gb|CP171122.1| | 45242 | g27097 | i0 | 100 | 0.173913043478261 | 28 | 0 | 17 | 0 | 126 | 153 | 397932 | 397959 | Capnocytophaga granulosa strain WGS1377 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Capnocytophaga | Capnocytophaga granulosa | |
| 12460362 | 12460362 | PRJDB3785_S_NODE_11230_length_227_cov_1.146067_g11077_i0 | PRJDB3785 | 11230 | 227 | 1.146067 | 2.60157209 | Flavobacterium | 237 | Bacteria | Bacteria | 350 | 6.400000000000001e-92 | NTclustered | gi|1003115209|gb|CP010992.1| | 996 | g11077 | i0 | 94.667 | 99.5770925110132 | 225 | 12 | 99 | 0 | 1 | 225 | 2875324 | 2875100 | Flavobacterium columnare strain B185, complete genome | blastn | 22604 | 350 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium columnare | |
| 13734669 | 13734669 | PRJDB3785_S_NODE_9051_length_251_cov_1.252475_g8898_i0 | PRJDB3785 | 9051 | 251 | 1.252475 | 3.14371225 | Flavobacterium | 237 | Bacteria | Bacteria | 448 | 2.48e-121 | NTclustered | gi|1003115209|gb|CP010992.1| | 996 | g8898 | i0 | 98.805 | 703.96015936255 | 251 | 3 | 100 | 0 | 1 | 251 | 473144 | 473394 | Flavobacterium columnare strain B185, complete genome | blastn | 176694 | 448 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium columnare | |
| 14036837 | 14036837 | PRJDB3785_S_NODE_18712_length_183_cov_1.082090_g18559_i0 | PRJDB3785 | 18712 | 183 | 1.08209 | 1.9802247 | Flavobacterium haoranii | 683124 | Bacteria | Bacteria | 119 | 1.52e-22 | NTclustered | gi|1769900038|gb|CP045292.1| | 683124 | g18559 | i0 | 80.255 | 1.77049180327869 | 157 | 31 | 86 | 0 | 26 | 182 | 337338 | 337494 | Flavobacterium haoranii strain KCTC 23008 chromosome, complete genome | blastn | 324 | 119 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium haoranii | |
| 15009044 | 15009044 | PRJDB3785_S_NODE_20512_length_176_cov_1.141732_g20359_i0 | PRJDB3785 | 20512 | 176 | 1.141732 | 2.00944832 | Bacteroidota | 976 | Bacteria | Bacteria | 315 | 1.7199999999999996e-81 | NTclustered | gi|2450142035|gb|OQ546399.1| | 239 | g20359 | i0 | 98.87 | 100.568181818182 | 177 | 1 | 100 | 1 | 1 | 176 | 347 | 523 | Flavobacterium sp. strain CA_59 16S ribosomal RNA gene, partial sequence | blastn | 17700 | 315 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium sp. | |
| 16283872 | 16283872 | PRJDB3785_S_NODE_18413_length_184_cov_1.133333_g18260_i0 | PRJDB3785 | 18413 | 184 | 1.133333 | 2.08533272 | Flavobacterium | 237 | Bacteria | Bacteria | 274 | 3.0799999999999997e-69 | NTclustered | gi|2324023522|gb|CP109993.1| | 2885633 | g18260 | i0 | 93.478 | 539.907608695652 | 184 | 12 | 100 | 0 | 1 | 184 | 1334343 | 1334160 | Flavobacterium sp. N1719 chromosome, complete genome | blastn | 99343 | 274 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium sp. N1719 | |
| 16585696 | 16585696 | PRJDB3785_S_NODE_24914_length_164_cov_1.330435_g24761_i0 | PRJDB3785 | 24914 | 164 | 1.330435 | 2.1819134 | Dysgonomonadaceae bacterium zrk40 | 2811465 | Bacteria | Bacteria | 71.3 | 3.78e-8 | NTclustered | gi|1992198317|gb|CP070276.1| | 2811465 | g24761 | i0 | 92.157 | 1.53048780487805 | 51 | 2 | 30 | 2 | 71 | 120 | 1110711 | 1110760 | Dysgonomonadaceae bacterium zrk40 chromosome, complete genome | blastn | 251 | 71.3 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Dysgonomonadaceae | Dysgonomonadaceae bacterium zrk40 | ||
| 18832923 | 18832923 | PRJDB3785_S_NODE_12315_length_218_cov_1.846154_g12162_i0 | PRJDB3785 | 12315 | 218 | 1.846154 | 4.02461572 | Flavobacterium | 237 | Bacteria | Bacteria | 348 | 2.19e-91 | NTclustered | gi|2183943025|gb|CP091285.1| | 998845 | g12162 | i0 | 98 | 391.224770642202 | 200 | 4 | 92 | 0 | 19 | 218 | 860500 | 860301 | Flavobacterium jumunjinense strain HME7102 chromosome, complete genome | blastn | 85287 | 348 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium jumunjinense | |
| 22658188 | 22658188 | PRJDB3785_S_NODE_5138_length_334_cov_1.800000_g4985_i0 | PRJDB3785 | 5138 | 334 | 1.8 | 6.012 | Flavobacterium | 237 | Bacteria | Bacteria | 545 | 1.18e-150 | NTclustered | gi|1003115209|gb|CP010992.1| | 996 | g4985 | i0 | 96.375 | 685.913173652695 | 331 | 12 | 100 | 0 | 1 | 331 | 472629 | 472959 | Flavobacterium columnare strain B185, complete genome | blastn | 229095 | 545 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium columnare | |
| 25207266 | 25207266 | PRJDB3785_S_NODE_24960_length_164_cov_1.330435_g24807_i0 | PRJDB3785 | 24960 | 164 | 1.330435 | 2.1819134 | Bacteroidota | 976 | Bacteria | Bacteria | 303 | 3.42e-78 | NTclustered | gi|1205046745|gb|MF289256.1| | 239 | g24807 | i0 | 100 | 243.579268292683 | 164 | 0 | 100 | 0 | 1 | 164 | 1229 | 1066 | Flavobacterium sp. strain MMS16-B8 16S ribosomal RNA gene, partial sequence | blastn | 39947 | 303 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;