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contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJDB3785" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 25 ✖

bioproject 1

  • PRJDB3785 · 25 ✖

analysis 1

  • blastn · 25 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1283047 1283047 PRJDB3785_S_NODE_18842_length_182_cov_1.563910_g18689_i0 PRJDB3785 18842 182 1.56391 2.8463162 Heterostelium album 2086695 Evosea other_Eukaryota 95.3 2.54e-15   NTclustered gi|1160573022|ref|XM_020576689.1| 670386 g18689 i0 82.407 0.901098901098901 108 19 59 0 30 137 406 513 Polysphondylium pallidum PN500 40S ribosomal protein S3 (rps3), partial mRNA blastn 164 95.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
2558746 2558746 PRJDB3785_S_NODE_3183_length_435_cov_3.409326_g3030_i0 PRJDB3785 3183 435 3.409326 14.8305681 Acanthamoeba culbertsoni 43142 Discosea other_Eukaryota 281 4.92e-71   NTclustered gi|53829553|gb|AY582829.1| 43142 g3030 i0 80.863 81.5126436781609 371 59 84 11 1 365 874 1238 Acanthamoeba culbertsoni ef1a gene, partial cds blastn 35458 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba culbertsoni
2558828 2558828 PRJDB3785_S_NODE_703_length_967_cov_6.190632_g630_i0 PRJDB3785 703 967 6.190632 59.86341144 Dictyostelium discoideum 44689 Evosea other_Eukaryota 686 0   NTclustered gi|66820862|ref|XM_638894.1| 352472 g630 i0 80.663 91.229576008273 905 157 93 18 72 967 1131 236 Dictyostelium discoideum AX4 hypothetical protein (act20) mRNA, complete cds blastn 88219 686 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
3834913 3834913 PRJDB3785_S_NODE_14024_length_206_cov_1.662420_g13871_i0 PRJDB3785 14024 206 1.66242 3.4245852 Dictyostelium discoideum 44689 Evosea other_Eukaryota 270 4.569999999999999e-68   NTclustered gi|66820523|ref|XM_638773.1| 352472 g13871 i0 90.338 92.9660194174757 207 18 100 2 1 206 214 9 Dictyostelium discoideum AX4 hypothetical protein (act22) mRNA, complete cds blastn 19151 270 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
4809104 4809104 PRJDB3785_S_NODE_22644_length_168_cov_1.663866_g22491_i0 PRJDB3785 22644 168 1.663866 2.79529488 Acanthamoeba 5754 Discosea other_Eukaryota 161 2.25e-35   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g22491 i0 90.833 9.5 120 11 71 0 1 120 412 293 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 1596 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6387234 6387234 PRJDB3785_S_NODE_7946_length_266_cov_2.589862_g7793_i0 PRJDB3785 7946 266 2.589862 6.88903292 Dictyostelium purpureum 5786 Evosea other_Eukaryota 246 1.0399999999999999e-60   NTclustered gi|330793486|ref|XM_003284767.1| 5786 g7793 i0 85.062 83.8947368421053 241 36 91 0 1 241 266 26 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_91392), mRNA blastn 22316 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
6387237 6387237 PRJDB3785_S_NODE_8086_length_264_cov_2.116279_g7933_i0 PRJDB3785 8086 264 2.116279 5.58697656 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 287 6.07e-73   NTclustered gi|221185864|gb|FJ577811.1| 590481 g7933 i0 90.583 45.4090909090909 223 11 84 8 42 264 577 365 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 11988 287 1 Eukaryota Amoebozoa             uncultured Amoebozoa
7661191 7661191 PRJDB3785_S_NODE_3107_length_440_cov_1.979540_g2955_i0 PRJDB3785 3107 440 1.97954 8.709976 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.3 1.17e-7   NTclustered gi|470394136|ref|XM_004334911.1| 1257118 g2955 i0 100 9.4 38 0 9 0 277 314 1687 1724 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096160), partial mRNA blastn 4136 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8935782 8935782 PRJDB3785_S_NODE_20328_length_176_cov_2.196850_g20175_i0 PRJDB3785 20328 176 2.19685 3.866456 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 78.7 2.45e-10   NTclustered gi|354720326|gb|HQ687485.1| 1105345 g20175 i0 89.062 1.73863636363636 64 5 36 2 81 143 904 966 Vexillifera bacillipedes strain CCAP 1590/1 small subunit ribosomal RNA gene, partial sequence blastn 306 78.7 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
8935961 8935961 PRJDB3785_S_NODE_9248_length_248_cov_2.175879_g9095_i0 PRJDB3785 9248 248 2.175879 5.39617992 Entamoeba dispar 46681 Evosea other_Eukaryota 202 2.0999999999999998e-47   NTclustered gi|167393182|ref|XM_001740406.1| 370354 g9095 i0 85.864 72.8629032258064 191 25 77 2 59 248 469 280 Entamoeba dispar SAW760 elongation factor 1-alpha (EDI_196620), partial mRNA blastn 18070 202 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
10211549 10211549 PRJDB3785_S_NODE_10129_length_238_cov_1.291005_g9976_i0 PRJDB3785 10129 238 1.291005 3.0725919 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 163 9.47e-36   NTclustered gi|221185864|gb|FJ577811.1| 590481 g9976 i0 79.842 29.6806722689076 253 28 99 16 3 238 1169 923 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 7064 163 1 Eukaryota Amoebozoa             uncultured Amoebozoa
10211639 10211639 PRJDB3785_S_NODE_17309_length_189_cov_1.092857_g17156_i0 PRJDB3785 17309 189 1.092857 2.06549973 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 200 5.47e-47   NTclustered gi|62910949|gb|AY925001.1| 5778 g17156 i0 95.935 0.873015873015873 123 5 65 0 4 126 123 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 165 200 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11184476 11184476 PRJDB3785_S_NODE_17329_length_189_cov_1.092857_g17176_i0 PRJDB3785 17329 189 1.092857 2.06549973 Entamoeba 5758 Evosea other_Eukaryota 167 5.549999999999999e-37   NTclustered gi|158940|gb|L02417.1|ENHEF2 5759 g17176 i0 88.028 6.38095238095238 142 15 75 2 2 142 428 288 Entamoeba histolytica translation elongation factor-2 (EF-2) mRNA, complete cds blastn 1206 167 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
11486862 11486862 PRJDB3785_S_NODE_5390_length_326_cov_1.361011_g5237_i0 PRJDB3785 5390 326 1.361011 4.43689586 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 241 6.09e-59   NTclustered gi|470514016|ref|XM_004352683.1| 1257118 g5237 i0 87.805 7.19325153374233 205 25 63 0 1 205 134 338 Acanthamoeba castellanii str. Neff ribosomal protein S19, putative (ACA1_067910), partial mRNA blastn 2345 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12460377 12460377 PRJDB3785_S_NODE_4630_length_353_cov_2.282895_g4477_i0 PRJDB3785 4630 353 2.282895 8.05861935 Dictyostelium 5782 Evosea other_Eukaryota 167 1.14e-36   NTclustered gi|551445|emb|Z37981.1| 44689 g4477 i0 88.652 4.38243626062323 141 10 46 4 8 142 3202 3342 D.discoideum gene for protein kinase blastn 1547 167 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
12762247 12762247 PRJDB3785_S_NODE_12151_length_219_cov_5.147059_g11998_i0 PRJDB3785 12151 219 5.147059 11.27205921 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 261 2.96e-65   NTclustered gi|470512968|ref|XM_004352512.1| 1257118 g11998 i0 90.404 85.7168949771689 198 19 90 0 22 219 1 198 Acanthamoeba castellanii str. Neff actin-1, putative (ACA1_361250), partial mRNA blastn 18772 261 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12762508 12762508 PRJDB3785_S_NODE_7171_length_280_cov_2.722944_g7018_i0 PRJDB3785 7171 280 2.722944 7.6242432000000004 Cochliopodium minus 313997 Discosea other_Eukaryota 326 1.38e-84   NTclustered gi|330902893|gb|JF298271.1| 313997 g7018 i0 90.612 86.7 245 23 88 0 33 277 857 1101 Cochliopodium minus clone 5202 actin gene, partial cds blastn 24276 326 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
16585564 16585564 PRJDB3785_S_NODE_14214_length_205_cov_1.538462_g14061_i0 PRJDB3785 14214 205 1.538462 3.1538471 Schizoplasmodiopsis vulgaris 435421 Evosea other_Eukaryota 222 1.29e-53   NTclustered gi|159082997|gb|EF513198.1| 435421 g14061 i0 86.341 76.1756097560976 205 26 99 2 1 204 249 46 Schizoplasmodiopsis vulgaris elongation factor 1A (EF1A) gene, partial cds blastn 15616 222 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis vulgaris
16585742 16585742 PRJDB3785_S_NODE_3674_length_400_cov_1.777778_g3521_i0 PRJDB3785 3674 400 1.777778 7.111112 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 315 4.43e-81   NTclustered gi|470467440|ref|XM_004341747.1| 1257118 g3521 i0 81.771 78.8075 384 63 95 6 1 379 459 840 Acanthamoeba castellanii str. Neff guanine nucleotide-binding protein beta subunit, putative (ACA1_199990), partial mRNA blastn 31523 315 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17860531 17860531 PRJDB3785_S_NODE_11715_length_223_cov_1.172414_g11562_i0 PRJDB3785 11715 223 1.172414 2.61448322 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 95.3 3.24e-15   NTclustered gi|470519749|ref|XM_004353447.1| 1257118 g11562 i0 91.304 0.991031390134529 69 6 31 0 63 131 156 88 Acanthamoeba castellanii str. Neff ribosomal L29e protein family (ACA1_143310), partial mRNA blastn 221 95.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20409461 20409461 PRJDB3785_S_NODE_24217_length_165_cov_1.974138_g24064_i0 PRJDB3785 24217 165 1.974138 3.2573277 Acytostelium subglobosum 361139 Evosea other_Eukaryota 82.4 1.76e-11   NTclustered gi|831789132|ref|XM_012903508.1| 1410327 g24064 i0 91.667 0.363636363636364 60 3 36 2 1 59 717 775 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 60 82.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
21685303 21685303 PRJDB3785_S_NODE_13618_length_209_cov_0.950000_g13465_i0 PRJDB3785 13618 209 0.95 1.9855 Paramoeba branchiphila 308475 Discosea other_Eukaryota 178 2.9e-40   NTclustered gi|226347442|gb|FJ807261.1| 308475 g13465 i0 83.598 62.9377990430622 189 29 90 2 19 206 734 547 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 13154 178 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
22960668 22960668 PRJDB3785_S_NODE_14099_length_206_cov_0.974522_g13946_i0 PRJDB3785 14099 206 0.974522 2.00751532 Paramoeba perurans 437603 Discosea other_Eukaryota 163 7.97e-36   NTclustered gi|2635491373|gb|OR923386.1| 437603 g13946 i0 81.592 53.6116504854369 201 33 97 4 1 199 478 280 Paramoeba perurans clone PPER_00013037 heat shock 90 mRNA, complete cds blastn 11044 163 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
23933615 23933615 PRJDB3785_S_NODE_24819_length_164_cov_1.773913_g24666_i0 PRJDB3785 24819 164 1.773913 2.90921732 Physarum 5790 Evosea other_Eukaryota 143 7.9e-30   NTclustered gi|2916681488|gb|PP948833.1| 31288 g24666 i0 84.667 87.8841463414634 150 16 90 7 5 151 524 379 Physarum sp. voucher HMJAU M20367-2 translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 14413 143 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum sp.
23933626 23933626 PRJDB3785_S_NODE_9799_length_242_cov_1.098446_g9646_i0 PRJDB3785 9799 242 1.098446 2.65823932 Dictyostelium 5782 Evosea other_Eukaryota 303 5.45e-78   NTclustered gi|167579|gb|M14146.1|DDIACT15 44689 g9646 i0 90.129 96.4586776859504 233 23 96 0 10 242 640 872 D.discoideum actin 15 gene, complete cds blastn 23343 303 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;