RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJDB14275" and tax_phylum = "Cyanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJDB14275 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2256386 2256386 PRJDB14275_P_NODE_7142_length_168_cov_0.945736_g7083_i0 PRJDB14275 7142 168 0.945736 1.58883648 Chroococcidiopsis 54298 Bacteria Bacteria 311 2.11e-80   NTclustered gi|428006994|gb|CP003597.1| 251229 g7083 i0 100 4.26785714285714 168 0 100 0 1 168 6124348 6124181 Chroococcidiopsis thermalis PCC 7203, complete genome blastn 717 311 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis
2558490 2558490 PRJDB14275_P_NODE_7003_length_170_cov_1.213740_g6944_i0 PRJDB14275 7003 170 1.21374 2.063358 Chroococcidiopsis thermalis 54299 Bacteria Bacteria 315 1.64e-81   NTclustered gi|428006994|gb|CP003597.1| 251229 g6944 i0 100 2 170 0 100 0 1 170 2290777 2290608 Chroococcidiopsis thermalis PCC 7203, complete genome blastn 340 315 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis
7660944 7660944 PRJDB14275_P_NODE_8367_length_151_cov_1.098214_g8308_i0 PRJDB14275 8367 151 1.098214 1.65830314 Chroococcidiopsis thermalis 54299 Bacteria Bacteria 268 1.12e-67   NTclustered gi|428006994|gb|CP003597.1| 251229 g8308 i0 99.324 1.97350993377483 148 1 98 0 1 148 5614717 5614864 Chroococcidiopsis thermalis PCC 7203, complete genome blastn 298 268 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis
14036682 14036682 PRJDB14275_P_NODE_7212_length_167_cov_1.132812_g7153_i0 PRJDB14275 7212 167 1.132812 1.89179604 uncultured cyanobacterium 1211 Bacteria Bacteria 283 4.56e-72   NTclustered gi|238955308|emb|FM252972.1| 1211 g7153 i0 98.742 105.077844311377 159 2 95 0 9 167 231 73 Uncultured cyanobacterium partial 16S rRNA gene, clone NL8BD-02-H04 blastn 17548 283 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
15008946 15008946 PRJDB14275_P_NODE_4352_length_256_cov_1.000000_g4293_i0 PRJDB14275 4352 256 1 2.56 Geminocystis 669357 Bacteria Bacteria 89.8 1.77e-13   NTclustered gi|770466698|dbj|AP014815.1| 1615909 g4293 i0 94.737 20.0234375 57 3 22 0 191 247 599427 599371 Geminocystis sp. NIES-3708 DNA, complete genome blastn 5126 89.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Geminocystis Geminocystis sp. NIES-3708
19134164 19134164 PRJDB14275_P_NODE_7076_length_169_cov_0.938462_g7017_i0 PRJDB14275 7076 169 0.938462 1.58600078 Chroococcidiopsis sp. CCNUC1 2653189 Bacteria Bacteria 307 2.73e-79   NTclustered gi|2245124533|gb|CP097480.1| 2653189 g7017 i0 99.408 2 169 1 100 0 1 169 5938832 5938664 Chroococcidiopsis sp. CCNUC1 chromosome, complete genome blastn 338 307 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. CCNUC1
22960586 22960586 PRJDB14275_P_NODE_8479_length_150_cov_1.225225_g8420_i0 PRJDB14275 8479 150 1.225225 1.8378375 Chroococcidiopsis thermalis 54299 Bacteria Bacteria 154 3.26e-33   NTclustered gi|428006994|gb|CP003597.1| 251229 g8420 i0 94.059 3.86666666666667 101 6 84 0 25 125 5719974 5720074 Chroococcidiopsis thermalis PCC 7203, complete genome blastn 580 154 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;