RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB14275" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 4 ✖

bioproject 1

  • PRJDB14275 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8610 8610 PRJDB14275_P_NODE_3521_length_309_cov_3.255556_g3462_i0 PRJDB14275 3521 309 3.255556 10.05966804 Coelastrum microporum 55409 Plants Plants 534 2.35e-147   NTclustered gi|2557734685|gb|OR397928.1| 55409 g3462 i0 100 93.6407766990291 289 0 94 0 21 309 2323 2611 Coelastrum microporum strain CCAP 217/1A small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28935 534 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
8935582 8935582 PRJDB14275_P_NODE_4468_length_249_cov_5.323810_g4409_i0 PRJDB14275 4468 249 5.32381 13.2562869 Coccoidesmus tetrasporum 3062090 Plants Plants 339 1.5399999999999998e-88   NTclustered gi|2581663370|gb|OR350844.1| 3062090 g4409 i0 97.015 31.3172690763052 201 6 81 0 49 249 106132 106332 Coccoidesmus tetrasporum chloroplast, complete genome blastn 7798 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coccoidesmus Coccoidesmus tetrasporum
14036675 14036675 PRJDB14275_P_NODE_6692_length_175_cov_2.191176_g6633_i0 PRJDB14275 6692 175 2.191176 3.834558 Luculia yunnanensis 1043446 Plants Plants 52.8 0.015   NTclustered gi|363453795|gb|JN871303.1| 1043446 g6633 i0 96.774 0.177142857142857 31 1 18 0 39 69 59 89 Luculia yunnanensis clone MH8 microsatellite sequence blastn 31 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Gentianales Rubiaceae Luculia Luculia yunnanensis
15008997 15008997 PRJDB14275_P_NODE_7312_length_165_cov_1.603175_g7253_i0 PRJDB14275 7312 165 1.603175 2.64523875 Urticaceae 3499 Plants Plants 305 9.59e-79   NTclustered gi|2254130374|gb|OM892796.1| 3501 g7253 i0 100 99.6424242424242 165 0 100 0 1 165 2604 2440 Urtica dioica isolate W174 18S small subunit ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence blastn 16441 305 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Urticaceae Urtica Urtica dioica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;