RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB14274" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJDB14274 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3531600 3531600 PRJDB14274_S_NODE_6463_length_248_cov_1.475936_g6385_i0 PRJDB14274 6463 248 1.475936 3.66032128 Eukaryota 2759 Plants Plants 52.8 0.022   NTclustered gi|302835242|ref|XM_002949137.1| 3068 g6385 i0 100 1.69354838709677 28 0 11 0 135 162 5411 5384 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_120738), partial mRNA blastn 420 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
8634077 8634077 PRJDB14274_S_NODE_8927_length_212_cov_1.390728_g8849_i0 PRJDB14274 8927 212 1.390728 2.94834336 Eukaryota 2759 Plants Plants 392 9.67e-105   NTclustered gi|1714003650|gb|MN243923.1| 3079 g8849 i0 100 100.02358490566 212 0 100 0 1 212 62 273 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 21205 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
13734446 13734446 PRJDB14274_S_NODE_4631_length_288_cov_1.352423_g4553_i0 PRJDB14274 4631 288 1.352423 3.89497824 Eukaryota 2759 Plants Plants 532 7.8e-147   NTclustered gi|1714003650|gb|MN243923.1| 3079 g4553 i0 100 99.6597222222222 288 0 100 0 1 288 550 837 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 28702 532 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
18832724 18832724 PRJDB14274_S_NODE_9135_length_210_cov_1.302013_g9057_i0 PRJDB14274 9135 210 1.302013 2.7342273 Eukaryota 2759 Plants Plants 52.8 0.018   NTclustered gi|2082259355|ref|XM_043067830.1| 3055 g9057 i0 100 1.6 28 0 13 0 31 58 3556 3583 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g485500v5), mRNA blastn 336 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;