RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB12578" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJDB12578 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
980896 980896 PRJDB12578_S_NODE_74181_length_447_cov_4.195980_g51137_i0 PRJDB12578 74181 447 4.19598 18.7560306 Chaos 160821 Tubulinea other_Eukaryota 333 1.38e-86   NTclustered gi|421976368|gb|JQ519502.1| 160823 g51137 i0 89.734 56.076062639821 263 23 58 4 188 447 857 1118 Chaos carolinense clone JG10.98 18S ribosomal RNA gene, partial sequence blastn 25066 333 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
5110252 5110252 PRJDB12578_S_NODE_83745_length_366_cov_5.299685_g60687_i0 PRJDB12578 83745 366 5.299685 19.3968471 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 344 5.12e-90   NTclustered gi|17897590|emb|AJ314605.1| 160820 g60687 i0 83.733 65.3852459016394 375 50 100 10 1 366 1391 1763 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 23931 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
10205460 10205460 PRJDB12578_S_NODE_159049_length_194_cov_4.993103_g135991_i0 PRJDB12578 159049 194 4.993103 9.68661982 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 139 1.25e-28   NTclustered gi|145386791|gb|EF216916.1| 136459 g135991 i0 80 45.3092783505155 190 37 97 1 6 194 1615 1426 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 8790 139 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;