RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJDB12578" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6083944 6083944 PRJDB12578_S_NODE_150345_length_203_cov_1.006494_g127287_i0 PRJDB12578 150345 203 1.006494 2.04318282 Lawsonia 41707 Bacteria Bacteria 231 2.12e-56   NTclustered gi|94730694|emb|AM180252.1| 363253 g127287 i0 87.192 3 203 26 100 0 1 203 1069428 1069630 Lawsonia intracellularis PHE/MN1-00 blastn 609 231 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis
6382826 6382826 PRJDB12578_S_NODE_214306_length_162_cov_0.911504_g191248_i0 PRJDB12578 214306 162 0.911504 1.47663648 Trichlorobacter lovleyi 313985 Bacteria Bacteria 128 2.18e-25   NTclustered gi|189419341|gb|CP001089.1| 398767 g191248 i0 94.118 48.9691358024691 85 4 52 1 13 96 1789610 1789694 Geobacter lovleyi SZ, complete genome blastn 7933 128 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter lovleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;