RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJDB12578" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4808721 4808721 PRJDB12578_S_NODE_194464_length_168_cov_2.605042_g171406_i0 PRJDB12578 194464 168 2.605042 4.37647056 Entosiphon 101492 Euglenozoa other_Eukaryota 300 4.56e-77   NTclustered gi|41400272|gb|AY425008.1| 259048 g171406 i0 98.81 65.6607142857143 168 2 100 0 1 168 456 623 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 11031 300 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003
17558666 17558666 PRJDB12578_S_NODE_169854_length_185_cov_2.272059_g146796_i0 PRJDB12578 169854 185 2.272059 4.20330915 Entosiphon 101492 Euglenozoa other_Eukaryota 209 8.86e-50   NTclustered gi|41400272|gb|AY425008.1| 259048 g146796 i0 95.42 4.19459459459459 131 6 71 0 5 135 76 206 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 776 209 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;