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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJDB12578" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJDB12578 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
980896 980896 PRJDB12578_S_NODE_74181_length_447_cov_4.195980_g51137_i0 PRJDB12578 74181 447 4.19598 18.7560306 Chaos 160821 Tubulinea other_Eukaryota 333 1.38e-86   NTclustered gi|421976368|gb|JQ519502.1| 160823 g51137 i0 89.734 56.076062639821 263 23 58 4 188 447 857 1118 Chaos carolinense clone JG10.98 18S ribosomal RNA gene, partial sequence blastn 25066 333 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
1277168 1277168 PRJDB12578_S_NODE_168642_length_186_cov_2.043796_g145584_i0 PRJDB12578 168642 186 2.043796 3.80146056 Korotnevella heteracantha 1825508 Discosea other_Eukaryota 339 1.0899999999999998e-88   NTclustered gi|1031914903|gb|KU314430.1| 1825508 g145584 i0 99.462 98.8440860215054 186 1 100 0 1 186 506 321 Korotnevella heteracantha isolate Valamo 3 clone 3 18S ribosomal RNA gene, partial sequence blastn 18385 339 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella heteracantha
5110252 5110252 PRJDB12578_S_NODE_83745_length_366_cov_5.299685_g60687_i0 PRJDB12578 83745 366 5.299685 19.3968471 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 344 5.12e-90   NTclustered gi|17897590|emb|AJ314605.1| 160820 g60687 i0 83.733 65.3852459016394 375 50 100 10 1 366 1391 1763 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 23931 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
5110647 5110647 PRJDB12578_S_NODE_93045_length_317_cov_5.847015_g69987_i0 PRJDB12578 93045 317 5.847015 18.53503755 Paramoeba branchiphila 308475 Discosea other_Eukaryota 381 3.3299999999999996e-101   NTclustered gi|145386792|gb|EF216917.1| 308475 g69987 i0 88.545 98.9495268138801 323 26 100 10 1 317 1140 1457 Paramoeba branchiphila strain SEDMH1 28S large subunit ribosomal RNA gene, partial sequence blastn 31367 381 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
8633827 8633827 PRJDB12578_S_NODE_122547_length_238_cov_6.169312_g99489_i0 PRJDB12578 122547 238 6.169312 14.68296256 Vexillifera 218659 Root_unresolved Root_unresolved 189 1.5599999999999999e-43   NTclustered gi|221185864|gb|FJ577811.1| 590481 g99489 i0 81.967 36.7100840336134 244 25 100 14 1 238 1325 1555 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 8737 189 1 Eukaryota Amoebozoa             uncultured Amoebozoa
8633944 8633944 PRJDB12578_S_NODE_217487_length_154_cov_2.942857_g194429_i0 PRJDB12578 217487 154 2.942857 4.53199978 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.004   NTclustered gi|183234349|ref|XM_644357.2| 294381 g194429 i0 100 0.792207792207792 29 0 19 0 64 92 1657 1629 Entamoeba histolytica HM-1:IMSS uncharacterized protein (EHI_188580), partial mRNA blastn 122 54.7 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
10205460 10205460 PRJDB12578_S_NODE_159049_length_194_cov_4.993103_g135991_i0 PRJDB12578 159049 194 4.993103 9.68661982 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 139 1.25e-28   NTclustered gi|145386791|gb|EF216916.1| 136459 g135991 i0 80 45.3092783505155 190 37 97 1 6 194 1615 1426 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 8790 139 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
12459943 12459943 PRJDB12578_S_NODE_175350_length_181_cov_1.575758_g152292_i0 PRJDB12578 175350 181 1.575758 2.85212198 Entamoeba 5758 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|67484603|ref|XM_652430.1| 294381 g152292 i0 96.97 0.364640883977901 33 1 18 0 56 88 388 420 Entamoeba histolytica HM-1:IMSS serine/threonine-protein kinase, putative (EHI_148200), partial mRNA blastn 66 56.5 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
12761744 12761744 PRJDB12578_S_NODE_92631_length_319_cov_2.696296_g69573_i0 PRJDB12578 92631 319 2.696296 8.60118424 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 566 8.64e-157   NTclustered gi|365928255|gb|JN825705.1| 590481 g69573 i0 98.746 62.1724137931034 319 2 100 2 1 319 665 981 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 19833 566 1 Eukaryota Amoebozoa             uncultured Amoebozoa
14029192 14029192 PRJDB12578_S_NODE_121092_length_241_cov_1.880208_g98034_i0 PRJDB12578 121092 241 1.880208 4.53130128 Cavenderia fasciculata 261658 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|470236523|ref|XM_004350165.1| 261658 g98034 i0 100 0.116182572614108 28 0 12 0 209 236 1836 1863 Cavenderia fasciculata RNA-binding region RNP-1 domain-containing protein (DFA_11272), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
14029761 14029761 PRJDB12578_S_NODE_135512_length_219_cov_1.658824_g112454_i0 PRJDB12578 135512 219 1.658824 3.63282456 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.005   NTclustered gi|66810102|ref|XM_633683.1| 352472 g112454 i0 100 0.132420091324201 29 0 13 0 9 37 732 760 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0284131) mRNA, complete cds blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14035337 14035337 PRJDB12578_S_NODE_71652_length_476_cov_4.487119_g48633_i0 PRJDB12578 71652 476 4.487119 21.35868644 Paramoeba perurans 437603 Discosea other_Eukaryota 270 1.1699999999999997e-67   NTclustered gi|145386786|gb|EF216911.1| 437603 g48633 i0 78.409 24.5420168067227 440 78 91 12 45 476 1 431 Neoparamoeba perurans strain GD-HAC/2/2 28S large subunit ribosomal RNA gene, partial sequence blastn 11682 270 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
16578613 16578613 PRJDB12578_S_NODE_138734_length_215_cov_1.668675_g115676_i0 PRJDB12578 138734 215 1.668675 3.58765125 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 281 2.22e-71   NTclustered gi|365928255|gb|JN825705.1| 590481 g115676 i0 98.137 42.7348837209302 161 3 75 0 1 161 943 1103 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 9188 281 1 Eukaryota Amoebozoa             uncultured Amoebozoa
16579063 16579063 PRJDB12578_S_NODE_150594_length_202_cov_2.986928_g127536_i0 PRJDB12578 150594 202 2.986928 6.03359456 Thecamoeba vumurta 2893587 Discosea other_Eukaryota 357 3.3299999999999996e-94   NTclustered gi|2130839581|gb|OL423099.1| 2893587 g127536 i0 98.515 74.9009900990099 202 3 100 0 1 202 620 419 Thecamoeba vumurta strain Ta130 small subunit ribosomal RNA gene, partial sequence blastn 15130 357 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba vumurta
20408517 20408517 PRJDB12578_S_NODE_85277_length_357_cov_2.756494_g62219_i0 PRJDB12578 85277 357 2.756494 9.84068358 Dictyostelium purpureum 5786 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|330793621|ref|XM_003284834.1| 5786 g62219 i0 96.97 0.092436974789916 33 1 9 0 1 33 648 616 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_28377), partial mRNA blastn 33 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
20408805 20408805 PRJDB12578_S_NODE_91937_length_322_cov_4.476190_g68879_i0 PRJDB12578 91937 322 4.47619 14.4133318 Korotnevella heteracantha 1825508 Discosea other_Eukaryota 568 2.4299999999999993e-157   NTclustered gi|1047608804|gb|KU681500.1| 1825508 g68879 i0 98.447 76.167701863354 322 5 100 0 1 322 1102 781 Korotnevella heteracantha clone 151.6_108.4 18S ribosomal RNA gene, complete sequence blastn 24526 568 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella heteracantha
21382875 21382875 PRJDB12578_S_NODE_117717_length_247_cov_3.550505_g94659_i0 PRJDB12578 117717 247 3.550505 8.76974735 Vexillifera 218659 Root_unresolved Root_unresolved 222 1.61e-53   NTclustered gi|221185864|gb|FJ577811.1| 590481 g94659 i0 83.268 42.1619433198381 257 27 100 9 1 247 1790 1540 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 10414 222 1 Eukaryota Amoebozoa             uncultured Amoebozoa
24226959 24226959 PRJDB12578_S_NODE_121340_length_241_cov_1.322917_g98282_i0 PRJDB12578 121340 241 1.322917 3.18822997 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|1160573676|ref|XM_020577016.1| 670386 g98282 i0 100 0.116182572614108 28 0 12 0 92 119 251 278 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
24228109 24228109 PRJDB12578_S_NODE_151440_length_202_cov_1.000000_g128382_i0 PRJDB12578 151440 202 1 2.02 Rhizomastix vacuolata 1745346 Evosea other_Eukaryota 67.6 6.28e-7   NTclustered gi|944556491|gb|KP343626.1| 1745346 g128382 i0 91.667 0.95049504950495 48 4 24 0 10 57 329 282 Rhizomastix vacuolata strain GOL1 clone 2 small subunit ribosomal RNA gene, partial sequence blastn 192 67.6 1 Eukaryota Amoebozoa   Evosea       Rhizomastix Rhizomastix vacuolata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;